startFactorViz: startFactorViz This function intialises factorviz and start

In CompEpigen/FactorViz: Visualization app for methylome decomposition experiments

Description

startFactorViz This function intialises factorviz and start

Usage

startFactorViz(
  decomp_output = NULL,
  medecom_set = NULL,
  ann_C = NULL,
  ann_S = NULL,
  ref_meth = NULL,
  port = 6578
)

Arguments

decomp_output	takes in the directory path to decomp output
medecom_set	takes in the path to medecom set file or the MeDeCom Set object
ann_C	takes in the path to CpG Annotation file or the data.frame of CpG Annotations
ann_S	takes in the path to Sample Annotation file or the data.frame of Sample Annotations
ref_meth	takes in the path to Reference Methylome file or the data.frame of Reference Methylome
port	The port to be used for starting the interface in a webbrowser. If multiple parallel sessions are to be started, be sure to specify different ports.

Details

If decomp_output provided all other parameters force set to NULL

CompEpigen/FactorViz documentation built on April 30, 2020, 11:16 a.m.