Man pages for ComputationalIntelligenceGroup/neurostrplus
Computes neuronal morphometrics.
| compute_bounds_moments | Computes moments and range of XYZ |
| compute_com | Computes center of mass. assume soma is at 0, 0, 0. Should... |
| compute_derived | Requires max path distance as well. That is, it works on... |
| compute_lm_difference | Compute LM difference. |
| compute_mc_l1 | MC upper part specific width |
| compute_mean_direction | Computes mean direction Normalizes so that each segment is... |
| compute_origin | Estimate whether the axon originates above or below the soma |
| compute_pca_vars | Compute pca vars |
| compute_primitives_branch | compute_primitives_branch |
| compute_primitives_branch_node | compute_primitives_branch_node |
| compute_primitives_node | compute_primitives_node |
| compute_prob_translaminar | Compute translaminar |
| compute_vertex_ratio | Computes vertex ratio |
| convert2lm | Works both for axon and dendrites |
| count_bifs | Count bifurcations |
| count_neurite_types | Count neurite types |
| count_stems | Count stems |
| count_tips | Count tips |
| extend_branches | summarize seems i require is terminal etc. that is for the... |
| filter_dont_summarize | Measures not to summarize Contains both branch and node... |
| filter_xyz | Also keep neurite type? Make it optional argument? TODO: move... |
| flag_branches | TODO: Fix this in neurostr, i.e., make them logical #' flags... |
| format_layer | Correct layer format |
| get_theta_complement | Get complementary angles for a matrix of angles Angles muy be... |
| hello | Hello, World! |
| intersect_lm | Return a db with corresponding columns |
| is_no_or_unique_neuron | Check a single neuron or no rows at least move the... |
| layer_to_l1 | H to pia Sum of half L1 + above layers and optionally half... |
| norm_by_row | Norm by row |
| prob_l1 | Prob of L1 Assume soma centroid is at 0, 0, 0 |
| quantify_axonal | Quantify axon-specific vars |
| quantify_branches | Quantify the morphometrics of a set of branches |
| quantify_branch_node | Quantify all for a given domain. This does not include... |
| quantify_gaba | A specific quantification of metrics for gabaergic... |
| quantify_laminar | Quantify custom vars |
| quantify_nodes | Quantify the morphometrics of a set of nodes |
| quantify_petilla_neurtral | Petilla variables applicable to any domain that do not... |
| quantify_xyz | Quantify xyz with node Require node, although it really needs... |
| replicate_insertion_points | Replicate each point according to the length of its dendrite |
| summarize_branches | Summarize branches |
| summarize_measures | Summarize for a neuron |
