Man pages for ComputationalIntelligenceGroup/neurostrplus
Computes neuronal morphometrics.

compute_bounds_momentsComputes moments and range of XYZ
compute_comComputes center of mass. assume soma is at 0, 0, 0. Should...
compute_derivedRequires max path distance as well. That is, it works on...
compute_lm_differenceCompute LM difference.
compute_mc_l1MC upper part specific width
compute_mean_directionComputes mean direction Normalizes so that each segment is...
compute_originEstimate whether the axon originates above or below the soma
compute_pca_varsCompute pca vars
compute_primitives_branchcompute_primitives_branch
compute_primitives_branch_nodecompute_primitives_branch_node
compute_primitives_nodecompute_primitives_node
compute_prob_translaminarCompute translaminar
compute_vertex_ratioComputes vertex ratio
convert2lmWorks both for axon and dendrites
count_bifsCount bifurcations
count_neurite_typesCount neurite types
count_stemsCount stems
count_tipsCount tips
extend_branchessummarize seems i require is terminal etc. that is for the...
filter_dont_summarizeMeasures not to summarize Contains both branch and node...
filter_xyzAlso keep neurite type? Make it optional argument? TODO: move...
flag_branchesTODO: Fix this in neurostr, i.e., make them logical #' flags...
format_layerCorrect layer format
get_theta_complementGet complementary angles for a matrix of angles Angles muy be...
helloHello, World!
intersect_lmReturn a db with corresponding columns
is_no_or_unique_neuronCheck a single neuron or no rows at least move the...
layer_to_l1H to pia Sum of half L1 + above layers and optionally half...
norm_by_rowNorm by row
prob_l1Prob of L1 Assume soma centroid is at 0, 0, 0
quantify_axonalQuantify axon-specific vars
quantify_branchesQuantify the morphometrics of a set of branches
quantify_branch_nodeQuantify all for a given domain. This does not include...
quantify_gabaA specific quantification of metrics for gabaergic...
quantify_laminarQuantify custom vars
quantify_nodesQuantify the morphometrics of a set of nodes
quantify_petilla_neurtralPetilla variables applicable to any domain that do not...
quantify_xyzQuantify xyz with node Require node, although it really needs...
replicate_insertion_pointsReplicate each point according to the length of its dendrite
summarize_branchesSummarize branches
summarize_measuresSummarize for a neuron
ComputationalIntelligenceGroup/neurostrplus documentation built on April 21, 2018, 12:22 a.m.