compute_bounds_moments | Computes moments and range of XYZ |
compute_com | Computes center of mass. assume soma is at 0, 0, 0. Should... |
compute_derived | Requires max path distance as well. That is, it works on... |
compute_lm_difference | Compute LM difference. |
compute_mc_l1 | MC upper part specific width |
compute_mean_direction | Computes mean direction Normalizes so that each segment is... |
compute_origin | Estimate whether the axon originates above or below the soma |
compute_pca_vars | Compute pca vars |
compute_primitives_branch | compute_primitives_branch |
compute_primitives_branch_node | compute_primitives_branch_node |
compute_primitives_node | compute_primitives_node |
compute_prob_translaminar | Compute translaminar |
compute_vertex_ratio | Computes vertex ratio |
convert2lm | Works both for axon and dendrites |
count_bifs | Count bifurcations |
count_neurite_types | Count neurite types |
count_stems | Count stems |
count_tips | Count tips |
extend_branches | summarize seems i require is terminal etc. that is for the... |
filter_dont_summarize | Measures not to summarize Contains both branch and node... |
filter_xyz | Also keep neurite type? Make it optional argument? TODO: move... |
flag_branches | TODO: Fix this in neurostr, i.e., make them logical #' flags... |
format_layer | Correct layer format |
get_theta_complement | Get complementary angles for a matrix of angles Angles muy be... |
hello | Hello, World! |
intersect_lm | Return a db with corresponding columns |
is_no_or_unique_neuron | Check a single neuron or no rows at least move the... |
layer_to_l1 | H to pia Sum of half L1 + above layers and optionally half... |
norm_by_row | Norm by row |
prob_l1 | Prob of L1 Assume soma centroid is at 0, 0, 0 |
quantify_axonal | Quantify axon-specific vars |
quantify_branches | Quantify the morphometrics of a set of branches |
quantify_branch_node | Quantify all for a given domain. This does not include... |
quantify_gaba | A specific quantification of metrics for gabaergic... |
quantify_laminar | Quantify custom vars |
quantify_nodes | Quantify the morphometrics of a set of nodes |
quantify_petilla_neurtral | Petilla variables applicable to any domain that do not... |
quantify_xyz | Quantify xyz with node Require node, although it really needs... |
replicate_insertion_points | Replicate each point according to the length of its dendrite |
summarize_branches | Summarize branches |
summarize_measures | Summarize for a neuron |
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