id: An 'mzIdentML' file
In ComputationalProteomicsUnit/ProteomicsBioc2014Workshop: Bioc2014 workshop on R / Bioconductor packages for Proteomics
Description
This file has been generated by searching the raw mzXML file of
the ProteomeXchange PXD000001 data set against the
erwinia_carotovora.fasta using the MSGF+ search engine:
java -jar ~/bin/MSGFPlus.20140630/MSGFPlus.jar -s
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzXML -d
erwinia_carotovora.fasta -inst 1 -protocol 2
Examples
1
2
3
4
5
6
7
8
9
## source files to repeat the search
library("rpx")
px <- PXDataset("PXD000001")
pxfiles(px)
f <- dir(system.file("mzid", package = "RforProteomics"), full.names=TRUE)
library("mzID")
id <- mzID(f)
id
ComputationalProteomicsUnit/ProteomicsBioc2014Workshop documentation built on May 6, 2019, 12:50 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
This file has been generated by searching the raw mzXML file of
the ProteomeXchange PXD000001 data set against the
erwinia_carotovora.fasta using the MSGF+ search engine:
java -jar ~/bin/MSGFPlus.20140630/MSGFPlus.jar -s
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzXML -d
erwinia_carotovora.fasta -inst 1 -protocol 2
Examples
1 2 3 4 5 6 7 8 9 | ## source files to repeat the search
library("rpx")
px <- PXDataset("PXD000001")
pxfiles(px)
f <- dir(system.file("mzid", package = "RforProteomics"), full.names=TRUE)
library("mzID")
id <- mzID(f)
id
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.