TimePlot: Plotting ligand-receptor pairs

In Coolgenome/iTALK: Characterize and Illustrate Intercellular Communication

Description

This function loads count data as dataframe, ligand, receptor and two interactive cells' names as strings. The plot shows the expression level of ligand and receptor at different time, thus illustrates a dynamic change of a ligand-receptor pairs.

Usage

TimePlot(data, ligand, receptor, cell_from, cell_to, Time = NULL)

Arguments

data	A dataframe contains significant ligand-receptor pairs and related information such as expression level/log fold change and cell type
ligand	String as selected ligand
receptor	String as selected receptor
cell_from	The cell type ligand gene belongs to
cell_to	The cell type receptor gene belongs to
Time	Different time points showing on the plot

Value

A figure of the paired interactions

Coolgenome/iTALK documentation built on Aug. 3, 2019, 3:12 p.m.