truthset_de: Truth Set Redefinition

In Coraline66/Deseq: DESeq2 Gene Differential Analysis

Description

The function is used to obtain a new truth set for different data types via a combination of certain variables.

Usage

truthset_de(N, n, sam, datatype)

Arguments

N	integer. The number of iterations for resampling the original truth set.
n	integer. The number of samples in the new truth set.
sam	matrix obtained from first-step resampling.
datatype	character. "luad", "brca" or "sarc".

Details

This function imports a matrix attained from the first-step resampling, compares the DESeq results with that of the original truth set and exports a group of new truth sets(gene lists). Note that N should be equal to the number of rows of matrix sam, n should be equal to the 2 times the number of columns of matrix sam("luad", "brca") and 1 time the number columns of matrix sam("sarc").

Value

a list which is composed of N new truth sets for N iterations, respectively.

Examples

truthset_de(100, 170, sam, datatype="brca")

Coraline66/Deseq documentation built on May 6, 2019, 12:51 p.m.