auk_sampling: Reference to eBird sampling event file

In CornellLabofOrnithology/auk: eBird Data Extraction and Processing in R

Reference to eBird sampling event file

Description

Create a reference to an eBird sampling event file in preparation for filtering using AWK. For working with the sightings data use auk_ebd(), only use auk_sampling() if you intend to only work with checklist-level data.

Usage

auk_sampling(file, sep = "\t")

Arguments

file	character; input sampling event data file, which contains checklist data from eBird.
sep	character; the input field separator, the eBird data are tab separated so this should generally not be modified. Must only be a single character and space delimited is not allowed since spaces appear in many of the fields.

Details

eBird data can be downloaded as a tab-separated text file from the eBird website after submitting a request for access. In the eBird Basic Dataset (EBD) each row corresponds to a observation of a single bird species on a single checklist, while the sampling event data file contains a single row for every checklist. This function creates an R object to reference only the sampling data.

Value

An auk_sampling object storing the file reference and the desired filters once created with other package functions.

See Also

Other objects: auk_ebd()

Examples

# get the path to the example data included in the package
# in practice, provide path to the sampling event data
# e.g. f <- "data/ebd_sampling_relFeb-2018.txt"
f <- system.file("extdata/zerofill-ex_sampling.txt", package = "auk")
auk_sampling(f)

CornellLabofOrnithology/auk documentation built on April 15, 2024, 12:48 a.m.