In Covid19R/covid19mobility: Fetches Data on Covid-19 Mobility Trends from Different Sources

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)
options(rmarkdown.html_vignette.check_title = FALSE)

Google's data set is fascinating because it supplies information about a variety of different locations. The data is presented as percent change from a baseline of the average of a five week period from Jan 3 - Feb 6 2020.

The types of places are as follows (for subregions)

library(covid19mobility)
library(ggplot2)
library(dplyr)
library(tidyr)

goog <- refresh_covid19mobility_google_subregions()

goog %>%
  pull(data_type) %>%
  unique

Cool - we've got workplace and residential in there. I wonder if folk were spending more time at home and less time at work? The subregions data here is states/kantons/territories, etc. Google is pretty explicit that interregional comparisons are probably not valid, but, can we look at broad trends, with each region as a data point?

First, let's just look at, well, everything!

goog_wp <- goog %>%
  filter(data_type %in% c("workplaces_perc_ch",
                          "residential_perc_ch")) %>%
  filter(!is.na(value),
         !is.na(date))

goog_wp <- goog %>%
  filter(data_type %in% c("workplaces_perc_ch",
                          "residential_perc_ch")) %>%
  filter(!is.na(value))

ggplot(goog_wp,
       aes(x = date, y = value,
           group = location_code)) +
  geom_line(alpha = 0.15, color = "lightgrey") +
  facet_wrap(~data_type) +
  theme_bw() +
  stat_smooth(group = 1,
              method = "gam",
              fill = NA,
              color = "black")+
  labs(caption = "Data from Google Covid-19 Mobility Report\n
       https://www.google.com/covid19/mobility/") +
  xlab("") + ylab("Relative % Change")

Sure looks like inverse trends! Maybe? Let's plot the correlation!

goog_wp_wide <- pivot_wider(goog_wp,
                            names_from = data_type,
                            values_from = value) %>%
  filter(!is.na(residential_perc_ch)) #some unevenness is reporting

ggplot(goog_wp_wide %>% filter(workplaces_perc_ch<=100), #a few outliers
       aes(x = workplaces_perc_ch, 
           y = residential_perc_ch,
           color = as.numeric(date))) +
  geom_point(alpha = 0.2) +
  scale_color_viridis_c("Date",
                        breaks = as.numeric(pretty(goog_wp_wide$date)),
                        labels = pretty(goog_wp_wide$date)) +
  scale_x_continuous("Percent Change in Visits to Workplaces from baseline",
                     labels = function(x) paste0(x, '%'),
                     limits = c(-100,100)) +
  scale_y_continuous("Percent Change in Visits to Residences from baseline",
                     labels = function(x) paste0(x, '%')) +
  theme_bw() +
  labs(caption = "Data from Google Covid-19 Mobility Report\n
       https://www.google.com/covid19/mobility/")

From this point, it's mixed models ahoy! But I'll leave that to you all!

Covid19R/covid19mobility documentation built on March 11, 2021, 12:46 p.m.