Files in CreRecombinase/FGEM
R package for Functional Genomics using Expectation Maximization (FGEM)
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
FGEM.Rproj
NAMESPACE
R/FGEM_Func.R
R/RcppExports.R
R/fgem-package.R
R/utils-pipe.R
R/utils.R
README.md
data/BFdata.rda
data/BPGOdf.rda
data/exacdf.rda
inst/analyses/Bayes_EM_GWAS.R
inst/analyses/Bayes_EM_GWAS.Rmd
inst/analyses/BrainSpan.R
inst/analyses/CandidateASD.Rmd
inst/analyses/Cluster_FGEM.R
inst/analyses/Compare_FGEM.R
inst/analyses/Conservation_Analysis.R
inst/analyses/ExAC_Correction.Rmd
inst/analyses/FGEM.Rmd
inst/analyses/FGEM_Analyze.R
inst/analyses/FGEM_Final.Rmd
inst/analyses/FGEM_Func.R
inst/analyses/FGEM_GO_Analysis.Rmd
inst/analyses/FGEM_SIM.Rmd
inst/analyses/FGEM_Simulations.Rmd
inst/analyses/GenConstraintMat.R
inst/analyses/Generate_GOmat.R
inst/analyses/HyperTest.R
inst/analyses/Introduction.Rmd
inst/analyses/Naive_FGEM.R
inst/analyses/SFARIFunc.R
inst/analyses/SFARIgen.R
inst/analyses/SFARIgen_Analysis.R
inst/analyses/SQUAREGEM.R
inst/include/LBFGS.h
inst/include/LBFGSB.h
inst/include/LBFGSpp/BFGSMat.h
inst/include/LBFGSpp/BKLDLT.h
inst/include/LBFGSpp/Cauchy.h
inst/include/LBFGSpp/LineSearchBacktracking.h
inst/include/LBFGSpp/LineSearchBracketing.h
inst/include/LBFGSpp/LineSearchMoreThuente.h
inst/include/LBFGSpp/LineSearchNocedalWright.h
inst/include/LBFGSpp/Param.h
inst/include/LBFGSpp/SubspaceMin.h
inst/include/fgem.h
inst/include/stan_meta_header.hpp
inst/stan/include/license.stan
man/BF2posterior.Rd
man/cv_fgem.Rd
man/cv_relax_fgem.Rd
man/fgem-package.Rd
man/fgem.Rd
man/fgem_bfgs.Rd
man/fgem_grad.Rd
man/fgem_grad_stan.Rd
man/fgem_hess.Rd
man/fgem_hess_stan.Rd
man/fgem_lik.Rd
man/fgem_marginal.Rd
man/gen_posterior.Rd
man/gen_prior.Rd
man/log1mexp.Rd
man/log1pexp.Rd
man/log_pbernoulli.Rd
man/lseq.Rd
man/op-null-default.Rd
man/partial_resolve.Rd
man/pipe.Rd
man/predict_fgem.Rd
man/resolved_or_null.Rd
man/retrieve_resolved.Rd
man/sp_fgem_grad_stan.Rd
man/sp_fgem_hess_stan.Rd
man/sp_fgem_lik_stan.Rd
man/trip2sparseMatrix.Rd
man/wait_on_n.Rd
src/Makevars
src/RcppExports.cpp
src/fgem_funcs.cpp
tests/testthat/testEM.R
vignettes/fgem.Rmd
