groupMethodSelect: code classification method

In DHLab-CGU/emr: An analysis tool for diagnosis and procedure records

code classification method

Description

Common argument of diagnostic functions

Usage

groupMethodSelect(
  dxDataFile,
  idColName,
  icdColName,
  dateColName,
  icdVerColName = NULL,
  icd10usingDate = NULL,
  groupMethod = ccs,
  customGroupingTable,
  isDescription
)

Arguments

dxDataFile	A data frame object of clinical diagnostic data with at least 3 columns: ID, ICD, and Date. As for date column, the data format should be YYYY/MM/DD or YYYY-MM-DD.
idColName	Column name of ID column in dxDataFile. Data type of this argumant should be string without quotation marks.
icdColName	Column name of ICD column in dxDataFile. Data type of this argumant should be string without quotation marks.
dateColName	Column name of date column in dxDataFile, and the type of date column should be a date format in R or a string format with date information in YYYY/MM/DD or YYYY-MM-DD. Data type of this argumant should be string without quotation marks.
icdVerColName	(Optional) Column name if there is a columns to record ICD-9/10 version used in dxDataFile. In this column, data format should be numeric 9L or 10L to indicate which ICD version is used for each cell. See examples below to get more information.
icd10usingDate	The date that ICD-10 was started to be used in dxDataFile dataset. The data format should be YYYY/MM/DD or YYYY-MM-DD. Necessary if icdVerColName is null.
groupMethod	Four Stratified methods can be chosen: CCS ('ccs'), CCS levels ('ccslvl1', 'ccslvl2', 'ccslvl3', 'ccslvl4'), PheWAS ('PheWAS'), comorbidities ('ahrq','charlson', 'elix'), grepICD or customICD ('customGrepIcdGroup', 'customIcdGroup'). Change it to any of the other possible variables.
customGroupingTable	Table is for groupDataType
isDescription	Binary. If true, category description of classification methods will be used in the group column. If false, category name will be used. By default, it is set to be True (standard category description).

Details

Common argument of diagnostic functions

DHLab-CGU/emr documentation built on Sept. 2, 2023, 9:16 p.m.