| condMI | Calculate conditional mutual information |
| day_break | Find day break |
| downsample_function | downsample HCA timeseries |
| find_start_time | Find start time for HCA file |
| HCAdf_to_activity | Home cage activity summary |
| HCAdf_to_entropy | Home cage entropy summary |
| HCAdf_to_MI | Mutual Information summary |
| HCAdf_to_TE | Transfer entropy summary |
| hcaReadHDF5 | Read a HCA HDF5 file using rhdf5 |
| hcaReadHDF5series | Read many HCA HDF5 files |
| hcaSystemReadHDF5 | Read an HCA HDF5 file and return a list of dataframes, one... |
| hcaSystemReadHDF5_defense_func | defence for hcaSystemReadHDF5 inputs |
| hcaSystemReadHDF5_subj_defense_func | defence for hcaSystemReadHDF5 subjects |
| hca_to_dist_df | Obtain distance and speed |
| hca_to_hcadf | Convert HCA object to HCA dataframe |
| homeCageEntropy | Calculate home cage entropy |
| Mode | Find mode |
| no_message_h5ls | suppress console messages from rhdf5::h5ls |
| plot.HCA | Plot HCA |
| plot.HCAentropy | Plot HCA entropy |
| plot.HCAmi | Plot HCA MI |
| readsubjfunc | Subjects in HDF5 files |
| TransEnt | Calculate transfer entropy |
| tvec_to_dayvec | Annotate time with day or night |
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