get_testdata: Retrieve testing data from ngsrep for a gene
In DKMS-LSL/HLAsim: Simulate allelic dropouts in HLA data
Description
Usage
Arguments
Value
Examples
Description
Retrieve testing data from ngsrep for a gene
Usage
1
Arguments
gene
A HLA gene.
nextype_basis_id
A neXtype Basis ID.
Value
A table with the fields:
- lims_donor_id
- nextype_run_id
- orig_nmdp1
- orig_nmdp2
- exon
- eag_num
- main_eag
- total_reads
- best_reads
Examples
1
2
3
4
## Not run:
testdata <- get_testdata("DPB1", "1267")
## End(Not run)
DKMS-LSL/HLAsim documentation built on May 6, 2019, 1:17 p.m.
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Description Usage Arguments Value Examples
Description
Retrieve testing data from ngsrep for a gene
Usage
1 |
Arguments
gene |
A HLA gene. |
nextype_basis_id |
A neXtype Basis ID. |
Value
A table with the fields:
- lims_donor_id
- nextype_run_id
- orig_nmdp1
- orig_nmdp2
- exon
- eag_num
- main_eag
- total_reads
- best_reads
Examples
1 2 3 4 | ## Not run:
testdata <- get_testdata("DPB1", "1267")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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