Description Usage Arguments Value Examples
Get the reference sequences for alleles.
1 | getReference(x, allele)
|
x |
The database connection; an |
allele |
The alleles of interest as a character vector. |
A Biostrings:DNAStringSet
object with all references.
1 2 3 4 5 6 7 8 9 | ## Load the database
hla <- loadHlaData()
## Get the loci
loci <- getLoci(hla)
## Get alleles of a locus
alleles <- getAlleles(hla, loci[1])
allelesOfInterest <- alleles[1:10]
## Get the sequences
seqs <- getReference(hla, allelesOfInterest)
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