primefeature_corr: Prime Feature Correlation Get Correlation Coefficient and its...

In DKundnani/FeatureCorr: Finding associations through prime feature and pairwise correlations

Prime Feature Correlation Get Correlation Coefficient and its distribution of a single prime feature with all the other features

Description

Prime Feature Correlation Get Correlation Coefficient and its distribution of a single prime feature with all the other features

Usage

primefeature_corr(df,featurelist,primefeature,corrmeth,quantiles)

Arguments

df	A dataframe with echo row corresponding to a feature
featurelist	listing of feature names or ids to measure correlation between
primefeature	one feature of interest to measure correlation against all other features
corrmeth	Correlation method used. 'pearson' or 'spearman' (default='pearson')
quantiles	list of corresponding probabilities for quantiles to be obtained (default = c(0,0.01,.01,.05,0.10,.25,.50,.75,.90,.95,.99,.999,1) )

Examples

transdf<- data_transform(df=GTEX[-1],transformation='log2',
                         featurelist=GTEX$Description, medianthres=1)
inputdf<-transdf[[1]] #First item in the list returned is the transformed Data
primefcorr <- primefeature_corr(df=inputdf,featurelist=rownames(inputdf),primefeature="RNASEH2A");

DKundnani/FeatureCorr documentation built on April 24, 2022, 7:59 p.m.