getPkgs: Download organism AnnotationDbi

In DPP4ResearchGroup/SyntenyViz: Visualize the synteny of a gene structure across species

Download organism AnnotationDbi

Description

Download required AnnotationDbi class object if there is a corresponding database is available for the given organism.

Usage

getPkgs(orgm, orgDB)

Arguments

orgm

An organism that of interest. Options include: Btaurus(Bt) - Bos taurus - Cow Celegans(Ce) - Caenorhabditis elegans - Roundworm Cfamiliaris(Cf) - Canis familiaris - Dog Dmelanogaster(Dm) - Drosophila melanogaster - Fruitfly Drerio(Dr) - Danio rerio - Zebrafish Ggallus(Gg) - Gallus gallus - Chicken Hsapiens(Hs) - Homo Sapiens - Human Mmulatta(Mmu) - Macaca mulatta - Rhesus macaque Mmusculus(Mm) - Mus musculus - House mouse Ptroglodytes(Pt) - Pan troglodytes - Chimpanzee Rnorvegicus(Rn) - Rattus norvegicus - Brown rat Scerevisiae(Sc) - Saccharomyces cerevisiae - Brewer's yeast Sscrofa(Ss) - Sus scrofa - Wild swine

orgDB

A data.frame collection that contains available AnnotationDbi objs. e.g. orgmTxDB or orgmOrgDB.

getDB main function

main function includes: getPkgs

See Also

Other getDB: getOrgDB(), getTxDB()

Examples

## Not run: 
  orgm <- "Hsapiens"
  getPkgs (orgm, orgmTxDB)

## End(Not run)

DPP4ResearchGroup/SyntenyViz documentation built on Nov. 19, 2023, 1:16 a.m.