Files in DRK248/AssessORFData
Data and Files for the AssessORF Package
DESCRIPTION
NAMESPACE
R/GetDataMapObj.R
R/GetGeneSources.R
R/GetResultsObj.R
R/GetStrainIDs.R
R/SaveGenomeToPath.R
R/data.R
README.md
data/AP1_PreSaved_DataMapObj.rda
data/AP1_PreSaved_ResultsObj_GenBank.rda
data/AP1_PreSaved_ResultsObj_GeneMarkS2.rda
data/AP1_PreSaved_ResultsObj_Glimmer.rda
data/AP1_PreSaved_ResultsObj_Prodigal.rda
data/ATCC11842_PreSaved_DataMapObj.rda
data/ATCC11842_PreSaved_ResultsObj_GenBank.rda
data/ATCC11842_PreSaved_ResultsObj_Genbank.rda
data/ATCC11842_PreSaved_ResultsObj_GeneMarkS2.rda
data/ATCC11842_PreSaved_ResultsObj_Glimmer.rda
data/ATCC11842_PreSaved_ResultsObj_Prodigal.rda
data/ATCC13032_PreSaved_DataMapObj.rda
data/ATCC13032_PreSaved_ResultsObj_GenBank.rda
data/ATCC13032_PreSaved_ResultsObj_Genbank.rda
data/ATCC13032_PreSaved_ResultsObj_GeneMarkS2.rda
data/ATCC13032_PreSaved_ResultsObj_Glimmer.rda
data/ATCC13032_PreSaved_ResultsObj_Prodigal.rda
data/ATCC17978_PreSaved_DataMapObj.rda
data/ATCC17978_PreSaved_ResultsObj_GenBank.rda
data/ATCC17978_PreSaved_ResultsObj_Genbank.rda
data/ATCC17978_PreSaved_ResultsObj_GeneMarkS2.rda
data/ATCC17978_PreSaved_ResultsObj_Glimmer.rda
data/ATCC17978_PreSaved_ResultsObj_Prodigal.rda
data/ATCC700084_PreSaved_DataMapObj.rda
data/ATCC700084_PreSaved_ResultsObj_GenBank.rda
data/ATCC700084_PreSaved_ResultsObj_Genbank.rda
data/ATCC700084_PreSaved_ResultsObj_GeneMarkS2.rda
data/ATCC700084_PreSaved_ResultsObj_Glimmer.rda
data/ATCC700084_PreSaved_ResultsObj_Prodigal.rda
data/AssessORF_StrainIDs.rda
data/BW25113_PreSaved_DataMapObj.rda
data/BW25113_PreSaved_ResultsObj_GenBank.rda
data/BW25113_PreSaved_ResultsObj_GeneMarkS2.rda
data/BW25113_PreSaved_ResultsObj_Glimmer.rda
data/BW25113_PreSaved_ResultsObj_Prodigal.rda
data/CCMP1375_PreSaved_DataMapObj.rda
data/CCMP1375_PreSaved_ResultsObj_GenBank.rda
data/CCMP1375_PreSaved_ResultsObj_Genbank.rda
data/CCMP1375_PreSaved_ResultsObj_GeneMarkS2.rda
data/CCMP1375_PreSaved_ResultsObj_Glimmer.rda
data/CCMP1375_PreSaved_ResultsObj_Prodigal.rda
data/CECT5344_PreSaved_DataMapObj.rda
data/CECT5344_PreSaved_ResultsObj_GenBank.rda
data/CECT5344_PreSaved_ResultsObj_Genbank.rda
data/CECT5344_PreSaved_ResultsObj_GeneMarkS2.rda
data/CECT5344_PreSaved_ResultsObj_Glimmer.rda
data/CECT5344_PreSaved_ResultsObj_Prodigal.rda
data/CNRZ327_PreSaved_DataMapObj.rda
data/CNRZ327_PreSaved_ResultsObj_GenBank.rda
data/CNRZ327_PreSaved_ResultsObj_Genbank.rda
data/CNRZ327_PreSaved_ResultsObj_GeneMarkS2.rda
data/CNRZ327_PreSaved_ResultsObj_Glimmer.rda
data/CNRZ327_PreSaved_ResultsObj_Prodigal.rda
data/COH1_PreSaved_DataMapObj.rda
data/COH1_PreSaved_ResultsObj_GenBank.rda
data/COH1_PreSaved_ResultsObj_Genbank.rda
data/COH1_PreSaved_ResultsObj_GeneMarkS2.rda
data/COH1_PreSaved_ResultsObj_Glimmer.rda
data/COH1_PreSaved_ResultsObj_Prodigal.rda
data/D_UW_3_CX_PreSaved_DataMapObj.rda
data/D_UW_3_CX_PreSaved_ResultsObj_GenBank.rda
data/D_UW_3_CX_PreSaved_ResultsObj_Genbank.rda
data/D_UW_3_CX_PreSaved_ResultsObj_GeneMarkS2.rda
data/D_UW_3_CX_PreSaved_ResultsObj_Glimmer.rda
data/D_UW_3_CX_PreSaved_ResultsObj_Prodigal.rda
data/EGD_e_PreSaved_DataMapObj.rda
data/EGD_e_PreSaved_ResultsObj_GenBank.rda
data/EGD_e_PreSaved_ResultsObj_GeneMarkS2.rda
data/EGD_e_PreSaved_ResultsObj_Glimmer.rda
data/EGD_e_PreSaved_ResultsObj_Prodigal.rda
data/H37Rv_PreSaved_DataMapObj.rda
data/H37Rv_PreSaved_ResultsObj_GenBank.rda
data/H37Rv_PreSaved_ResultsObj_Genbank.rda
data/H37Rv_PreSaved_ResultsObj_GeneMarkS2.rda
data/H37Rv_PreSaved_ResultsObj_Glimmer.rda
data/H37Rv_PreSaved_ResultsObj_Prodigal.rda
data/HG001_PreSaved_DataMapObj.rda
data/HG001_PreSaved_ResultsObj_GenBank.rda
data/HG001_PreSaved_ResultsObj_GeneMarkS2.rda
data/HG001_PreSaved_ResultsObj_Glimmer.rda
data/HG001_PreSaved_ResultsObj_Prodigal.rda
data/Houston_1_PreSaved_DataMapObj.rda
data/Houston_1_PreSaved_ResultsObj_GenBank.rda
data/Houston_1_PreSaved_ResultsObj_GeneMarkS2.rda
data/Houston_1_PreSaved_ResultsObj_Glimmer.rda
data/Houston_1_PreSaved_ResultsObj_Prodigal.rda
data/Il1403_PreSaved_DataMapObj.rda
data/Il1403_PreSaved_ResultsObj_GenBank.rda
data/Il1403_PreSaved_ResultsObj_Genbank.rda
data/Il1403_PreSaved_ResultsObj_GeneMarkS2.rda
data/Il1403_PreSaved_ResultsObj_Glimmer.rda
data/Il1403_PreSaved_ResultsObj_Prodigal.rda
data/K_12_MG1655_PreSaved_DataMapObj.rda
data/K_12_MG1655_PreSaved_ResultsObj_GenBank.rda
data/K_12_MG1655_PreSaved_ResultsObj_GeneMarkS2.rda
data/K_12_MG1655_PreSaved_ResultsObj_Glimmer.rda
data/K_12_MG1655_PreSaved_ResultsObj_Prodigal.rda
data/LAL14_1_PreSaved_DataMapObj.rda
data/LAL14_1_PreSaved_ResultsObj_GenBank.rda
data/LAL14_1_PreSaved_ResultsObj_Genbank.rda
data/LAL14_1_PreSaved_ResultsObj_GeneMarkS2.rda
data/LAL14_1_PreSaved_ResultsObj_Glimmer.rda
data/LAL14_1_PreSaved_ResultsObj_Prodigal.rda
data/MG1363_PreSaved_DataMapObj.rda
data/MG1363_PreSaved_ResultsObj_GenBank.rda
data/MG1363_PreSaved_ResultsObj_GeneMarkS2.rda
data/MG1363_PreSaved_ResultsObj_Glimmer.rda
data/MG1363_PreSaved_ResultsObj_Prodigal.rda
data/MGAS5005_PreSaved_DataMapObj.rda
data/MGAS5005_PreSaved_ResultsObj_GenBank.rda
data/MGAS5005_PreSaved_ResultsObj_Genbank.rda
data/MGAS5005_PreSaved_ResultsObj_GeneMarkS2.rda
data/MGAS5005_PreSaved_ResultsObj_Glimmer.rda
data/MGAS5005_PreSaved_ResultsObj_Prodigal.rda
data/NCIB_3610_PreSaved_DataMapObj.rda
data/NCIB_3610_PreSaved_ResultsObj_GenBank.rda
data/NCIB_3610_PreSaved_ResultsObj_GeneMarkS2.rda
data/NCIB_3610_PreSaved_ResultsObj_Glimmer.rda
data/NCIB_3610_PreSaved_ResultsObj_Prodigal.rda
data/PAO1_PreSaved_DataMapObj.rda
data/PAO1_PreSaved_ResultsObj_GenBank.rda
data/PAO1_PreSaved_ResultsObj_Genbank.rda
data/PAO1_PreSaved_ResultsObj_GeneMarkS2.rda
data/PAO1_PreSaved_ResultsObj_Glimmer.rda
data/PAO1_PreSaved_ResultsObj_Prodigal.rda
data/SL1344_PreSaved_DataMapObj.rda
data/SL1344_PreSaved_ResultsObj_GenBank.rda
data/SL1344_PreSaved_ResultsObj_Genbank.rda
data/SL1344_PreSaved_ResultsObj_GeneMarkS2.rda
data/SL1344_PreSaved_ResultsObj_Glimmer.rda
data/SL1344_PreSaved_ResultsObj_Prodigal.rda
data/Strain10403S_PreSaved_DataMapObj.rda
data/Strain10403S_PreSaved_ResultsObj_GenBank.rda
data/Strain10403S_PreSaved_ResultsObj_GeneMarkS2.rda
data/Strain10403S_PreSaved_ResultsObj_Glimmer.rda
data/Strain10403S_PreSaved_ResultsObj_Prodigal.rda
data/Strain168_PreSaved_DataMapObj.rda
data/Strain168_PreSaved_ResultsObj_GenBank.rda
data/Strain168_PreSaved_ResultsObj_Genbank.rda
data/Strain168_PreSaved_ResultsObj_GeneMarkS2.rda
data/Strain168_PreSaved_ResultsObj_Glimmer.rda
data/Strain168_PreSaved_ResultsObj_Prodigal.rda
data/TCH1516_PreSaved_DataMapObj.rda
data/TCH1516_PreSaved_ResultsObj_GenBank.rda
data/TCH1516_PreSaved_ResultsObj_Genbank.rda
data/TCH1516_PreSaved_ResultsObj_GeneMarkS2.rda
data/TCH1516_PreSaved_ResultsObj_Glimmer.rda
data/TCH1516_PreSaved_ResultsObj_Prodigal.rda
inst/CITATION
inst/extdata/StrainGenomes.sqlite
man/AP1.Rd
man/ATCC11842.Rd
man/ATCC13032.Rd
man/ATCC17978.Rd
man/ATCC700084.Rd
man/AssessORF_StrainIDs.Rd
man/BW25113.Rd
man/CCMP1375.Rd
man/CECT5344.Rd
man/CNRZ327.Rd
man/COH1.Rd
man/D_UW_3_CX.Rd
man/EGD_e.Rd
man/GetDataMapObj.Rd
man/GetGeneSources.Rd
man/GetResultsObj.Rd
man/GetStrainIDs.Rd
man/H37Rv.Rd
man/HG001.Rd
man/Houston_1.Rd
man/Il1403.Rd
man/K_12_MG1655.Rd
man/LAL14_1.Rd
man/MG1363.Rd
man/MGAS5005.Rd
man/NCIB_3610.Rd
man/PAO1.Rd
man/SL1344.Rd
man/SaveGenomeToPath.Rd
man/Strain10403S.Rd
man/Strain168.Rd
man/TCH1516.Rd
vignettes/AssessORFDataGuide.Rmd
