SaveGenomeToPath: Save a Strain's Genome to a Directory

In DRK248/AssessORFData: Data and Files for the AssessORF Package

Description

Saves the genome for a specified strain to a given directory

Usage

SaveGenomeToPath(strainID, filePath)

Arguments

strainID	Character string corresponding to the strain identifier.
filePath	Character string corresponding to the path to the file path. Must end in '.fasta'.

Details

SaveGenomeToPath saves the genome for the specified strain ID to the given file path. If the file specified by the path already exists, it will be overwitten (with a warning). The given strain ID must be a part of the AssessORF set, and there is no partial matching. Otherwise, the function will error.

Note: there is no genome for strain ATCC700084, so a reference genome for the species (strain MC2155) is used instead.

Value

Invisibly returns filePath

Examples

tmpFile <- paste0(tempfile(), ".fasta")
SaveGenomeToPath("MGAS5005", tmpFile)
unlink(tmpFile)

DRK248/AssessORFData documentation built on Feb. 2, 2020, 11:06 p.m.