| AP1 | 'Assessment' Objects for _Streptococcus pyogenes_ strain AP1 |
| AssessORF_StrainIDs | Vector of strain IDs used in the package |
| ATCC11842 | 'Assessment' Objects for _Lactobacillus delbrueckii_ subsp.... |
| ATCC13032 | 'Assessment' Objects for _Corynebacterium glutamicum_ strain... |
| ATCC17978 | 'Assessment' Objects for _Acinetobacter baumannii_ strain... |
| ATCC700084 | 'Assessment' Objects for _Mycobacterium smegmatis_ strain... |
| BW25113 | 'Assessment' Objects for _Escherichia coli_ strain BW25113 |
| CCMP1375 | 'Assessment' Objects for _Prochlorococcus marinus_ subsp.... |
| CECT5344 | 'Assessment' Objects for _Pseudomonas pseudoalcaligenes_... |
| CNRZ327 | 'Assessment' Objects for _Lactobacillus delbrueckii_ subsp.... |
| COH1 | 'Assessment' Objects for _Streptococcus agalactiae_ strain... |
| D_UW_3_CX | 'Assessment' Objects for _Chlamydia trachomatis_ strain... |
| EGD_e | 'Assessment' Objects for _Listeria monocytogenes_ strain... |
| GetDataMapObj | Get a Data Map Object |
| GetGeneSources | Get the Gene Sources |
| GetResultsObj | Get a Results Object |
| GetStrainIDs | Get the Strain Identifiers |
| H37Rv | 'Assessment' Objects for _Mycobacterium tuberculosis_ strain... |
| HG001 | 'Assessment' Objects for _Staphylococcus aureus_ subsp.... |
| Houston_1 | 'Assessment' Objects for _Bartonella henselae_ strain... |
| Il1403 | 'Assessment' Objects for _Lactococcus lactis_ subsp. _lactis_... |
| K_12_MG1655 | 'Assessment' Objects for _Escherichia coli_ strain K-12... |
| LAL14_1 | 'Assessment' Objects for _Sulfolobus islandicus_ strain... |
| MG1363 | 'Assessment' Objects for _Lactococcus lactis_ subsp.... |
| MGAS5005 | 'Assessment' Objects for _Streptococcus pyogenes_ strain... |
| NCIB_3610 | 'Assessment' Objects for _Bacillus subtilis_ subsp.... |
| PAO1 | 'Assessment' Objects for _Pseudomonas aeruginosa_ strain PAO1 |
| SaveGenomeToPath | Save a Strain's Genome to a Directory |
| SL1344 | 'Assessment' Objects for _Salmonella enterica_ subsp.... |
| Strain10403S | 'Assessment' Objects for _Listeria monocytogenes_ strain... |
| Strain168 | 'Assessment' Objects for _Bacillus subtilis_ subsp.... |
| TCH1516 | 'Assessment' Objects for _Staphylococcus aureus_ subsp.... |
