Shiny.FieldLevelType2risk: Shiny app - Simulation of infection and detection process
In DanielBonnery/Strategy: X
Description
Usage
Arguments
Value
Examples
Description
Shiny app - Simulation of infection and detection process
Shiny app - Simulation of infection and detection process
Usage
1
2
3
Shiny.FieldLevelType2risk(Fields0 = get(data(Fake, package = "Strategy")))
Shiny.FieldLevelType2risk(Fields0 = get(data(Fake, package = "Strategy")))
Arguments
Fields
a Spatial Data frame with polygons
N
population size
m
number of infected
n0
number of bulks in sample
n1
number of trees in a bulk
n2
number of colected leaves per sampled tree
beta
risk at the leaf level, or 1-proportion of leaves with detectable RNA in an infected tree
Value
an integer, number of required leaves
an integer, number of required leaves
Examples
1
2
3
4
5
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7
8
9
10
requirednumberoftreeswithR(1237,6,1,1,0.63,0.05)
requirednumberoftreeswithoutR(1237,6,1,1,0.63,0.05)
riskwithoutR(1237,6,1236,1,0.63)
requirednumberoftreeswithoutR(1237,6,1,10,0.63,0.05)
requirednumberoftreeswithoutR(1237,6,1,10,0,0.05)
requirednumberoftreeswithR(1237,6,1,1,0.63,0.05)
requirednumberoftreeswithoutR(1237,6,1,1,0.63,0.05)
riskwithoutR(1237,6,1236,1,0.63)
requirednumberoftreeswithoutR(1237,6,1,10,0.63,0.05)
requirednumberoftreeswithoutR(1237,6,1,10,0,0.05)
DanielBonnery/Strategy documentation built on Dec. 17, 2021, 4:03 p.m.
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Description Usage Arguments Value Examples
Description
Shiny app - Simulation of infection and detection process
Shiny app - Simulation of infection and detection process
Usage
1 2 3 | Shiny.FieldLevelType2risk(Fields0 = get(data(Fake, package = "Strategy")))
Shiny.FieldLevelType2risk(Fields0 = get(data(Fake, package = "Strategy")))
|
Arguments
Fields |
a Spatial Data frame with polygons |
N |
population size |
m |
number of infected |
n0 |
number of bulks in sample |
n1 |
number of trees in a bulk |
n2 |
number of colected leaves per sampled tree |
beta |
risk at the leaf level, or 1-proportion of leaves with detectable RNA in an infected tree |
Value
an integer, number of required leaves
an integer, number of required leaves
Examples
1 2 3 4 5 6 7 8 9 10 | requirednumberoftreeswithR(1237,6,1,1,0.63,0.05)
requirednumberoftreeswithoutR(1237,6,1,1,0.63,0.05)
riskwithoutR(1237,6,1236,1,0.63)
requirednumberoftreeswithoutR(1237,6,1,10,0.63,0.05)
requirednumberoftreeswithoutR(1237,6,1,10,0,0.05)
requirednumberoftreeswithR(1237,6,1,1,0.63,0.05)
requirednumberoftreeswithoutR(1237,6,1,1,0.63,0.05)
riskwithoutR(1237,6,1236,1,0.63)
requirednumberoftreeswithoutR(1237,6,1,10,0.63,0.05)
requirednumberoftreeswithoutR(1237,6,1,10,0,0.05)
|
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