sharedCoor: Shared Coordinate

In DanielRivasMD/CopperGenomicFunctions: Compilation of R functions for Genomic Data

Description

sharedCoor takes two data.frames with start (first column) and end (second column) coordinates, and finds overlaps. dGenomic option ( default = FALSE ) if non-genomic coordinates, otherwise chromosome information must be entered in column 3. requires GenomicRanges (built-in).

Usage

sharedCoor(fQuery, fSubj, query, subj, dGenomic = FALSE)

Arguments

fQuery	data.frame interpreted as query with specified format
fSubj	data.frame interpreted as subject with specified format
query	Names to assign to query on output
subj	Names to assign to subject on output
dGenomic	boolean as to interpret third column as chromosome

Value

List of query and subject locations.

See Also

uniqueCoor

DanielRivasMD/CopperGenomicFunctions documentation built on Nov. 19, 2021, 10:11 p.m.