View source: R/FindMaxHomoOptimalPartitions.R
FindMaxHomoOptimalPartitions | R Documentation |
FindMaxHomoOptimalPartitions is a main function for inferring optimal homogeneous clusters from a multiresolution dataset DataT
.
FindMaxHomoOptimalPartitions( DataT, gamma = 0.05, insigThs = 1e-08, alpha = 0.05, minInvs = 99, polyDegree = 1, expFlag = FALSE, messageFlag = FALSE )
DataT |
contains a multiresolution dataset s.t.
|
gamma |
is a threshold to ... |
insigThs |
is a threshold to determine whether a magnitude of a feature coefficient is enough so that the feature is designated as a selected feature. |
alpha |
is a significance level to determine whether a magnitude of a feature coefficient is enough so that the feature is designated as a selected feature. |
minInvs |
is a minimum number of individuals for a cluster to be considered for inferring eta(C)cv, otherwise, eta(C)cv=0. |
polyDegree |
is a degree of polynomial function that is used to fit the data.
If it is greater than 1, the polynomial formula is used in |
expFlag |
is an exponential flag to control the formula for data fitting.
If it is true, then the exp() formula is used in |
messageFlag |
is a flag. If it is true, the function shows the text regarding the progress of computing. |
This function returns Copt
, models
, nNodes
, invOptCls
, and minR2cv
.
Copt |
|
clustInfoRecRatio |
|
models |
|
invOptCls |
|
minR2cv |
is the value of eta(C)cv from the cluster that has the lowest eta(C)cv. |
DataT |
is an updated |
# Running FindMaxHomoOptimalPartitions using simulation data DataT<-SimpleSimulation(100,type=1) obj<-FindMaxHomoOptimalPartitions(DataT,gamma=0.05)
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