computeMsigNetwork: Compute a network using computed gene set overlap

In DavisLaboratory/vissE: Visualising Set Enrichment Analysis Results

Compute a network using computed gene set overlap

Description

Computes an igraph object using information on gene sets and gene sets computed using the computeMsigOverlap() function.

Usage

computeMsigNetwork(genesetOverlap, msigGsc)

Arguments

genesetOverlap	a data.frame, containing results of an overlap analysis computed using the computeMsigOverlap() function.
msigGsc	a GeneSetCollection object, containing gene sets used to compute overlap.

Value

an igraph object

Examples

data(hgsc)
ovlap <- computeMsigOverlap(hgsc)
ig <- computeMsigNetwork(ovlap, hgsc)

DavisLaboratory/vissE documentation built on Jan. 31, 2024, 5:02 a.m.