Man pages for DecisionNeurosciencePsychopathology/DataTracker
DataTracker
| all_rows_true | Function to check if all values in a row are true across an... |
| backup_redcap | Function to run the backup of an entire REDCap data... |
| check_all_data | Function to check all data requirements. Simply iterates over... |
| check_id_path_data | Function to check that a subject has data for a set of ids. |
| clean_edu | Function to handle NA in edu data. |
| DNPLsetup | Function to be run to setup a base configuration for DNPL. |
| fetch_datatracker_cfg | Function to fetch and set the datatracker config files. |
| fetch_github_data | Function to fetch files from GitHub. |
| fetch_rclone_cfg | Function to get and set an rclone config file. |
| get_bsocial_task_redcap | Function to filter the bsocial scan data by task. |
| get_data_path | Function to get the path to data. |
| get_data_path_cfg | Function to get the path to data given by cfg |
| get_demo | Function to run the demographic stats. |
| get_explore2_clock_redcap | Function to filter explore2 scan data for clock, requires... |
| get_explore2_task_redcap | Function to filter the explore2 scan data by task. |
| get_explore_task_redcap | Function to filter the explore scan data by task. |
| get_github_creds | Function to grab the user's GitHub credentials |
| get_groups | Small function to get the groups for a protocol. |
| get_id_path_grepl_count | Function to get the number of matches if id paths to a grepl |
| get_masterdemo | #' Convenience function to install Rclone #' @return Boolean... |
| get_md_data | Function to grab data from master demo and merge. |
| get_merged_data | Function to grab data and merge it with master demo. |
| get_perc_f | Function to get the percent female. |
| get_perc_hl | Function to get the percent hispanic/latino. |
| get_project | Function to create a REDCapR project from json input. |
| get_real_id_regex | Function to get the regex to identify real participant ids of... |
| get_redcap_data | Wrapper function to source and execute a function for... |
| get_subj_ids_from_dir | Function to get the ids from a directory of subject data. |
| get_task_completion_requirements | Function to get the required data for a task. |
| get_time_stamp | Function to make a simple timestamp or return an empty... |
| have_behavior_data | Function to check for existence of behavioral data. Assumes... |
| have_bids_data | Function to check for existence of bids data. |
| have_data | Wrapper function to check |
| have_dax_data | Function to check for existence of xnat scanning data.... |
| have_daxmeson_data | Function that checks for existence of xnat scanning data and... |
| have_meson_data | Below imaging data functions will probably have to be unique... |
| is.mounted | Function to check if the remote data is mounted. |
| lab.cfg | Small function to get the default lab config path |
| lab.info | These are the utility functions for the data tracker. |
| lab_name | Function that simply returns the lab's name |
| mnt_attempt_check | Function to check that the mount succeeded or increment... |
| mnt_remote_data | Function to mount remote data using rclone. |
| mount_Bierka | Function for mounting the NAS, Bierka. |
| mount_Skinner | Function for mounting DNPLskinner SharePoint. |
| only.ds_store | Small function to check that .DS_Store is the only item in a... |
| os.is | Small function to get OS string identifier. |
| rclone.installed | Function to check that rclone is installed. |
| remnt_remote_data | Function to remount data: runs an unmount following by a... |
| remove_ds_store | Function to handle .DS_Store file on Mac systems. Will delete... |
| run_demographic_report | Function to run the master demo data pull for a... |
| set_github_creds | Simple function to create/overwrite GitHub credentials |
| set_lab.cfg | Function to set the lab config file. |
| set_leth | Function to set the lethality. |
| unmnt_remote_data | Function to unmount remote data that was mounted via rclone. |
| update_ethn | Function to update the ethnicity. |
| update_sex | Function to get the biological sex. |
| validate_masterdemo_premerge | Function to try binding the master demo to the protocol data |
| validate_masterdemo_updated | Function to validate that master demo is up to date with the... |
