backup_redcap: Function to run the backup of an entire REDCap data...
In DecisionNeurosciencePsychopathology/DataTracker: DataTracker

Description Usage Arguments Value Examples

Goal of this is to pull all fields for all records and export this as a single csv. Similar to the download csv functionality of the REDCap UI. Uses the REDCapR tool to accomplish the download.

backup_redcap(
  cfg,
  protocol,
  out_dir = getwd(),
  mnt_path = NA,
  remote_name = NA,
  remote_path = NA,
  max_attempts = 5,
  trap = FALSE,
  include_timestamp = FALSE
)

`cfg`	is the path to the lab's json configuration file. (Required)
`protocol`	is the project we want data from.
`out_dir`	is the directory to save the output to (Defaults to current)
`mnt_path`	is the directory to try and remount.
`remote_name`	is the name of the configured rclone remote.
`remote_path`	is the path to the remote directory to mount locally.
`max_attempts`	sets the max number of mount attempts.
`trap`	if set to TRUE, the mount will not persist after the session.
`include_timestamp`	will add a timestamp to the saved output.
`attempt`	sets the attempt number you are on.

An output csv that backs up REDCap data.

1 2 3	backup_redcap(cfg="/Volumes/bierka_root/datamesh/behav/redcap3.json", protocol="bsocial", out_dir="/Users/dnplserv/Desktop", include_timestamp=TRUE)