| bindingVector | Binding vector |
| getInputVector | Getting the actual binding vector |
| parametersVector | Parameters (Hamiltonians) vector |
| predictBinding | Predicts peptide:MHC-II binding interaction. |
| predictBindingSet | Make predictions for set of peptides and mhc-ii molecules |
| secondOrderHamiltonians | Second order Hamiltonians |
| sliding | Getting all possible frames |
| supportedMolecules | Supported MHC class II molecules |
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