predictBindingSet: Make predictions for set of peptides and mhc-ii molecules

In Degoot123/PeptideMHC2Prediction: Prediction of Peptide:MHC-II Molecules Interactions

Description

This function predicts binding affinities for a dataframe containing set of peptides with set of the targeted mhcii Molcules, associated with their perspective loci. It generalization of predictionBinding function.

Usage

predictBindingSet(dataset, opt = 1)

Arguments

dataset	Dataframe of three columns; containing the peptide, name of the mhc-ii molecule, and the name of locus, respectively. The order of columns must be maintained.
opt	Determines the prediction type (intra-allele or trans-alleles). 1 stands for intra-alleleic and 2 for trans-allelic. The default value of this is 1.

Value

A dataframe contains four columns: the peptide, the mhc-ii molecule name, the probability of the binding, and the binary value (0 or 1) respectively.

Examples

 predictBindingSet <- function(dataset, opt =2)

Degoot123/PeptideMHC2Prediction documentation built on May 21, 2019, 10:15 a.m.