Man pages for DesmondCampbell/diseaseRiskPredictor
Disease Risk Predictor
| dfDialectDisFile | Definition of Format of Disease Model File |
| dfPed3Gen1Aff | 3 Generation Pedigree. |
| fnBarPlotRisk | XXXX |
| fnCalcDiseaseModel | Calculates disease model based on epidemiological findings |
| fnCalcExprPropLifetimeRisk | Calculates expressed proportion of lifetime risk for pedigree... |
| fnCalcPedCov | Calc pedigree covariance matrix for trait risk factors,... |
| fnCalcPedDistributionPosteriorToObsRiskFactors | XXXX |
| fnCollateObservedRiskFactors | Collate observations on risk factors |
| fnConstructPedigree | Constructs a kinship2::pedigree object |
| fnConvertCovArrayIntoMatrix | Create population cov matrix for a single person |
| fnEstimateRiskFromTotLiaSample | Calculates risks based on a sample liability dataset |
| fnFix | My fix() function |
| fnHeatMapCovMatrix | Plots a heatmap representation of a covariance matrix |
| fnPredictRisk | Predicts risk in disease pedigree |
| fnPrepareForRiskPrediction | XXXX |
| fnReadDisFromFile | Reads a disease model file into a named list of values XXXX |
| fnReadFile | XXXX |
| fnReadFileDis | Reads a disease model from file |
| fnReadLinesDis | XXXX |
| fnReadLinesIntoDisList | XXXX XXXX |
| fnRep | My cat() function |
| fnRunOptim | Optimises liability mean and variance for a categorical risk... |
| fnSampleConditionedLiaDistribution | XXXX |
| fnSS | Calculates descriptive stats on data.frame columns |
| fnStr | My str() function |
| fnValidateCategoricalRiskFactorInputs | Validates categorical risk factor inputs, calculates directly... |
| fnValidatePedigree | Partial valdidation of a pedigree data.frame |
| lDisDepression | Disease Model for Major Depression |
| lDisSchizophrenia | Disease Model for Schizophrenia |
| plotRefStraMean | Generates plots indicative of whether Categorical risk factor... |
