pairs: An example genome alignment object.

In DessimozLab/OmaDB: R wrapper for the OMA REST API

An example genome alignment object.

Description

A dataframe containing information for the whole genome aligment of YEAST and ASHGO.

Usage

pairs

Format

A dataframe object with 12 variables for each member of the pair, as well some 3 additional variables:

entry_nr

entry number of the ortholog

omaid

oma identifier of the ortholog

canonicalid

canonicalid of the ortholog

sequence_md5

sequence_md5 of the ortholog

oma_group

oma_group of the ortholog

oma_hog_id

hog id of the ortholog

chromosome

chromosomal location of the ortholog

locus.start

start locus of the ortholog

locus.end

end locus of the ortholog

locus.strand

locus strand of the ortholog

is_main_isoform

true/false

rel_type

relationship type of the ortholog to the gene

distance

ortholog distance

score

ortholog score

...

Source

https://omabrowser.org/api/pairs/YEAST/ASHGO/

DessimozLab/OmaDB documentation built on Jan. 18, 2024, 12:08 a.m.