plotEnrichment: Displaying enrichment

In Distue/termEnrichment: Easy enrichment testing for multiple terms over a background

Description

visualization Barplot of log2 odd ratios of significantly enriched RNA types

Usage

plotEnrichment(X, nameColumn, onlySignificant,
                         maxDisplay, verbose,
                         gg, las, oma, ...)

Arguments

X	tibble. results table from the termEnrichment function
nameColumn	character. Name of column for the plot to display
onlySignificant	logical. display only signficant results if TRUE. significance is determined by column "significant"
maxDisplay	numeric. maximum number of terms to display
verbose	logical. hides messages if FALSE
gg	logical. use ggplot2 if TRUE. dafault: TRUE
las	numeric grapnical parameter las
oma	vector graphical parameter oma
...	graphical parameters

Value

ggplot object if gg = TRUE, else plots barchart

Author(s)

Thomas Schwarzl <[e-mail]>

Examples

data(yeastGO)
data(backgroundIDs)
data(foregroundIDs)
data(yeastGOdesc)

X <- termEnrichment(yeastGO, foregroundIDs, backgroundIDs, annotation = yeastGOdesc)
plotEnrichment(X)

Distue/termEnrichment documentation built on March 6, 2020, 9:28 a.m.