In DocEd/d.inspectEHR: Data Quality Evaluation for DECOVID

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)

d.inspectEHR

The goal of d.inspectEHR is to provide an early phase light touch quality evaluation for the DECOVID project. Prior to running these reports, sites must apply the DECOVID ddls and should try to run ACHILLES against their OMOP database.

Installation

You can install the development version of d.inspectEHR from GitHub with:

remotes::install_github("DocEd/d.inspectEHR")

Running the Report

The report can be run by loading the package and running the following code.

library(d.inspectEHR)
render_report(output = "DECOVID_report.html")

This will prompt a shiny interface to launch for you to enter your database connection details. You can also supply these directly:

library(d.inspectEHR)

render_report(
  output = "DECOVID_report.html",
  prams = list(
    driver = "PostgreSQL",
    host = "localhost",
    port = 5432,
    dbname = "omop",
    schema = "public",
    user = "w.flemming",
    password = "chromatin",
    local_hospital = "St. Elsewhere"
    )
  )