Bottomly_count: Evaluating gene expression in C57BL/6J and DBA/2J mouse...
In DongmeiLi2017/Combine: ComSeq: An ensemble method for RNA-Seq differential analysis
Description
Usage
Format
Value
Source
References
Description
The RNA-Seq data includes 10 B6 mouse strains and 11 D2 strains with an average of 22 million short sequencing reads generated per sample.
The reads were aligned to the mouse reference genome, and counts from 16,183 Ensembl genes for both strains were generated after
preprocessing. The Bottomly_count data in the ComSeq package include data from first 2000 genes in all 21 mouse samples.
Usage
1
Format
A matrix containing 2000 rows and 22 columns with each row denoting a gene and each column denoting a sample except the first column denoting the gene names.
Value
The Bottomly_count RNA-Seq example data set contains the following information:
gene
Name of gene
SRX
Name of mouse strain: First 10 are B6 strains and remaining 11 are D2 strains
Source
http://bowtie-bio.sourceforge.net/recount/
References
Bottomly D, Walter NAR, Hunter JE, Darakjian P, Kawane S, et al. (2011) Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-Seq and Microarrays. PLOS ONE 6(3): e17820. https://doi.org/10.1371/journal.pone.0017820
DongmeiLi2017/Combine documentation built on May 6, 2019, 2:53 p.m.
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Description Usage Format Value Source References
Description
The RNA-Seq data includes 10 B6 mouse strains and 11 D2 strains with an average of 22 million short sequencing reads generated per sample. The reads were aligned to the mouse reference genome, and counts from 16,183 Ensembl genes for both strains were generated after preprocessing. The Bottomly_count data in the ComSeq package include data from first 2000 genes in all 21 mouse samples.
Usage
1 |
Format
A matrix containing 2000 rows and 22 columns with each row denoting a gene and each column denoting a sample except the first column denoting the gene names.
Value
The Bottomly_count RNA-Seq example data set contains the following information:
gene |
Name of gene |
SRX |
Name of mouse strain: First 10 are B6 strains and remaining 11 are D2 strains |
Source
http://bowtie-bio.sourceforge.net/recount/
References
Bottomly D, Walter NAR, Hunter JE, Darakjian P, Kawane S, et al. (2011) Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-Seq and Microarrays. PLOS ONE 6(3): e17820. https://doi.org/10.1371/journal.pone.0017820
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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