Man pages for EDIorg/EMLtools
A tool kit for building EML metadata workflows
| annotate_element | Annotate an EML element |
| annotate_eml | Annotate an EML file (.xml) or an emld list object |
| api_get_provenance_metadata | Get provenance metadata |
| append_rp | Assign ResponsibleParty IDs and append recurrences to the rp... |
| assign_responsible_party_id | Update the rp object with ID information |
| attribute_template_to_table | Convert attributes file name to the corresponding data table... |
| check_uri | Check resolvability of URI |
| cnvmt | Convert empty text to empty EAL text |
| compile_geographic_coverage | Compile geographic coverage from multiple sources |
| compile_provenance | Compile provenance from multiple sources |
| delimiter_infer | Infer field delimiter from file name |
| detect_delimeter | Get field delimiters of input files |
| detect_delimeter_2 | Detect field delimiter 2 |
| detect_os | Detect operating system |
| eml2abstract | Create abstract template from EML |
| eml2additional_info | Create additional_info template from EML |
| eml2annotations | Create annotations template from EML |
| eml2categorical_variables | Create categorical variable template(s) from EML |
| eml2custom_units | Create custom units template from EML |
| eml2eal | Create EAL inputs from an EML file |
| eml2eal_losses | Check info lost in the EML to EAL translation |
| eml2geographic_coverage | Create geographic coverage template from EML |
| eml2intellectual_rights | Create intellectual_rights template from EML |
| eml2keywords | Create keywords template from EML |
| eml2make_eml | Create 'make_eml()' function call from EML |
| eml2methods | Create methods template from EML |
| eml2personnel | Create personnel template from EML |
| eml2provenance | Create provenance template from EML |
| eml2table_attributes | Create table attributes template(s) from EML |
| eml2taxonomic_coverage | Create taxonomic coverage template from EML |
| fix_methods | Fix methods section of EML file |
| get_anno_context | Get context for annotations template |
| get_anno_element | Get element for annotations template |
| get_anno_id | Get id for annotations template |
| get_anno_subject | Get subject for annotations template |
| get_class | Get class of table attribute |
| get_misscode | Get missing value code |
| get_misscodedef | Get missing value code definition |
| get_parallel_nodes | Get parallel node values |
| get_proj | Get project information |
| get_reference | Get referenced node |
| get_resparty | Get responsible party |
| get_unit | Get unit |
| get_xpaths_and_vals | Get all xpaths and values in a nodeset |
| has_parent | Has parent node |
| is_catvar | Is attribute a categorical variable? |
| is_char | Is attribute a character? |
| is_date | Is attribute a Date? |
| is_empty_nodeset | Is empty nodeset? |
| is_num | Is attribute a numeric variable? |
| is_prov | Is provenance node? |
| issues | View issues to function inputs |
| make_eml | Make EML metadata |
| nodeset2txt | Convert nodeset to EAL text type template |
| read_eml | Read EML into an emld list object |
| rm_pred | Remove xpath predicates |
| set_methods_md | Create methods node from .md file |
| table_to_attribute_template | Convert data table file name to the corresponding attributes... |
| template_annotations | Add semantic meaning |
| template_arguments | Create a list of inputs to EMLassemblyline functions... |
| template_categorical_variables | Describe categorical variables of a data table |
| template_core_metadata | Describe core features of a data package |
| template_directories | Initialize directories for templates, data objects, and EML |
| template_geographic_coverage | Describe where the data were collected |
| template_provenance | Describe source datasets |
| template_table_attributes | Describe data tables |
| template_taxonomic_coverage | Describe biological organisms (taxa) |
| to_docbook | Convert to docbook |
| url_env | Make URL for PASTA+ environment |
| validate_abstract | Validate the abstract template |
| validate_annotation | Validate the annotations template (annotations.txt) |
| validate_annotation_column_names | Check column names of the annotations template |
| validate_annotation_completeness | Check completeness of the annotations template |
| validate_annotation_uri | Check URIs are resolvable in the annotations template |
| validate_arguments | Validate arguments of EMLassemblyline functions |
| validate_categorical_variable_column_names | Check column names of categorical variables template |
| validate_categorical_variable_definitions | Check for categorical variable definitions |
| validate_categorical_variable_listing | Check variables classified as categorical are listed in the... |
| validate_categorical_variables | Validate the categorical variables template (catvars_*.txt) |
| validate_categorical_variable_template_presence | Check for presence of the categorical variables template |
| validate_eml_content | Check EML for supported/unsupported content |
| validate_file_names | Validate file names |
| validate_geographic_coord_desc | Validate geographic coordinate and description pair |
| validate_geographic_coverage | Validate geographic coverage metadata |
| validate_geographic_coverage_column_names | Check column names of geographic coverage template |
| validate_geographic_coverage_completeness | Check completeness of the geographic coverage template |
| validate_geographic_coverage_coordinate_format | Check for decimal degree format in the geographic coverage... |
| validate_geographic_coverage_coordinate_range | Check geographic coordinate ranges |
| validate_geographic_coverage_presence | Check geographic coverage template presence |
| validate_intellectual_rights | Validate the intellectual rights template |
| validate_keywords | Validate the keywords template |
| validate_maintenance_description | Validate maintenance description |
| validate_methods | Validate the methods template |
| validate_other_entity_description | Validate other entity description |
| validate_other_entity_name | Validate other entity names |
| validate_other_entity_url | Validate other entity url |
| validate_path | Validate path |
| validate_personnel | Validate the personnel template |
| validate_personnel_column_names | Check column names of personnel template |
| validate_personnel_contact | Check for contact in personnel template |
| validate_personnel_creator | Check for creator in personnel template |
| validate_personnel_pi | Check for principal investigator in personnel template |
| validate_personnel_presence | Validate personnel template presence |
| validate_personnel_project | Check for project information in the personnel template |
| validate_personnel_publisher | Check for one publisher in the personnel template |
| validate_personnel_roles | Check for defined roles in personnel template |
| validate_provenance | Validate the provenance template |
| validate_provenance_column_names | Check column names of provenance template |
| validate_provenance_contact_creator | Check creator and contact in the provenance template |
| validate_provenance_data_package_id | Check the dataPackageID + systemID pair resolves in the... |
| validate_provenance_email | Check for email in external resources in the provenance... |
| validate_provenance_individual_organization_name | Check individual and organization name of external resources... |
| validate_provenance_online_description | Check for description of external resources in the provenance... |
| validate_provenance_system_id | Check for allowed systemID in provenance template |
| validate_provenance_title | Check for title of external resources in the provenance... |
| validate_provenance_url_presence | Check a URL is present for external resources in the... |
| validate_provenance_url_resolvability | Check a URL can be resolved for external resources in the... |
| validate_table_attribute_class_presence | Check for attribute class presence |
| validate_table_attribute_class_type | Check for attribute class type |
| validate_table_attribute_date_format_presence | Check presence of date and time format specifier |
| validate_table_attribute_definitions | Check for attribute definitions |
| validate_table_attribute_false_numeric | Check numeric attributes for non-numeric values |
| validate_table_attribute_missing_value_code_definition | Check each missing value code has a definition and vise versa |
| validate_table_attribute_missing_value_code_quantity | Check the quantity of missing value codes |
| validate_table_attribute_missing_value_code_ws | Check missing value code for white space |
| validate_table_attribute_name_order | Check all column names are listed in the same order as in the... |
| validate_table_attribute_name_presence | Check all column names of a data table are listed |
| validate_table_attributes | Validate the table attributes template (attributes_*.txt) |
| validate_table_attribute_template_column_names | Check column names of table attributes template |
| validate_table_attribute_template_presence | Check for presence of the table attributes template |
| validate_table_attribute_unit_definition | Check for unit definitions |
| validate_table_attribute_unit_presence | Check each numeric attribute has a unit |
| validate_table_description | Validate data table description |
| validate_table_encoding | Validate character encoding of tabular files |
| validate_table_name | Validate data table names |
| validate_table_quote_character | Validate data table quote characters |
| validate_table_url | Validate data table url |
| validate_taxonomic_coverage | Validate the taxonomic_coverage template |
| validate_taxonomic_coverage_authority_system | Check authority_system values in the taxonomic coverage... |
| validate_taxonomic_coverage_column_names | Check column names of taxonomic coverage template |
| validate_taxonomic_coverage_completeness | Check completeness of the taxonomic coverage template |
| validate_templates | Validate metadata template content |
| validate_temporal_coverage | Validate temporal coverage |
| validate_title | Validate dataset title |
| validate_title_length | Check title length |
| validate_title_presence | Check for title presence |
| view_unit_dictionary | Browse EML's dictionary for defining units of data attributes |
| vocab_lter_id | Get the ID for an LTER controlled vocab term |
| vocab_lter_scope | Get the scope of an LTER Controlled Vocabulary term |
| vocab_lter_term | Search for an LTER Controlled Vocabulary term |
| vocab_resolve_terms | Resolve terms to a controlled vocabulary |
| write_template | Write template to file |
| xml_val | Get XML values |
