seurat_transfer_data: Seurat Transfer Data

In EDePasquale/Ericas_Functions: A Package of Erica's Most Used Functions for Processing Data Plus Random Utilities

Description

This function allows you to classify cells in the list of datasets using the reference with the Seurat transferData() function

Usage

seurat_transfer_data(
  reference,
  datasets,
  results_name = "results",
  ordering_vector = "none",
  cluster_names = "none",
  cluster_colors = "none"
)

Arguments

reference	Path to a Seurat object that is an integrated reference
datasets	List of directories containing a Seurat object Example single directory path is "~/Documents/Projects/Data_files_temp/Donor/SBM1014/Seurat.rds"
results_name	The name you would prefer to call the output directory. Default is "results"
ordering_vector	A numeric vector containing the order you would like your clusters to appear in the plot, starting with 1. Default is "none", which retains the original order.
cluster_names	A character vector containing the names of the clusters, in the original order. Default is "none" or cluster numbers to be used.
cluster_colors	A character vector containing hex codes for the colors of cluster, in the original order. Default is "none" for random colors.

Examples

seurat_transfer_data()

EDePasquale/Ericas_Functions documentation built on Dec. 17, 2021, 5:38 p.m.