Man pages for EG-lisy/BSAvis
Bulk Segregant Analysis - Visualisation Package
| BSAvis_shiny | Run BSAvis |
| calc_deltaSNPindex | Calculate delta(SNP index) |
| calc_SNPindex | Calculate SNP-index |
| calc_SNPratio | Calculate SNP-ratio |
| deltaSNPindex_plot | delta(SNP-index) Wrapper Function |
| extract_chrIDs | Extract Chromosome IDs |
| filter_SNPindex | Filter SNP-index Variants |
| filter_SNPratio | Filter SNP-index Variants |
| plot_deltaSNPindex | Plot delta(SNP index) |
| plot_SNPindex | Plot SNP-indices |
| plot_SNPratio | Plot SNP-ratio |
| readBSA_vcf | Read vcf file |
| shiny_deltaSNPindex | delta(SNP-index) Wrapper Function |
| shinyPlot_deltaSNPindex | Plot delta(SNP index) |
| shinyPlot_SNPindex | Shiny: Plot SNP-indices |
| shinyPlot_SNPratio | Shiny: Plot SNP-ratio |
| shiny_SNPindex | SNP-index Wrapper Function |
| shiny_SNPratio | Shiny SNP-ratio Wrapper Function |
| slidingWindow | Sliding Windows |
| SNPindex_plot | SNP-index Wrapper Function |
| SNPratio_plot | SNP-ratio Wrapper Function |
