shinyPlot_deltaSNPindex: Plot delta(SNP index)

In EG-lisy/BSAvis: Bulk Segregant Analysis - Visualisation Package

Description

Please note that this function is not to be run manually. Creates plots specific to the R-shiny application, showing the delta(SNP-index) values against the mid position of the corresponding window of a specific chromosome.

Usage

shinyPlot_deltaSNPindex(vcf.df.window.delta, chr, ranges)

Arguments

vcf.df.window.delta	filtered data frame (containing both bulks)
chr	chrosome ID
ranges	axes ranges (x,y)

Details

This function is a variant of the plot_deltaSNPindex() function created to meet the needs of the R-shiny application. The difference with the original is that it includes a "ranges" argument that allows setting the limits of the x and y-axis, to show a zoomed area of the delta(SNP-index) plot when selected. If no area is selected, the x and y axis limits will be set to null, showing the entire plot.

This function does not include any arguments related to plot saving since this functionality is linked to a saving button found inside the BSAvis R-Shiny application.

EG-lisy/BSAvis documentation built on Dec. 17, 2021, 5:38 p.m.