extras/PackageMaintenance.R

In EHDEN/CatalogueExport: Exports Descriptive Statistics Summary for the EHDEN Database Catalogue

# @file PackageMaintenance.R
#
# Copyright 2020 European Health Data and Evidence Network (EHDEN)
#
# This file is part of CatalogueExport
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
# @author European Health Data and Evidence Network
# @author Peter Rijnbeek

# Manually delete package from library. Avoids "Already in use" message when rebuilding
unloadNamespace("CatalogueExport")
.rs.restartR()
folder <- system.file(package = "CatalogueExport")
folder
unlink(folder, recursive = TRUE, force = TRUE)
file.exists(folder)

# Format and check code:
OhdsiRTools::formatRFolder()
OhdsiRTools::checkUsagePackage("CatalogueeExport")
OhdsiRTools::updateCopyrightYearFolder()
OhdsiRTools::findNonAsciiStringsInFolder()
devtools::spell_check()

# Create manual and vignettes:
unlink("inst/doc/CatalogueExport.pdf")
system("R CMD Rd2pdf ./ --output=inst/doc/CatalogueExport.pdf")
tools::compactPDF("inst/doc/CatalogueExport.pdf", gs_quality = "ebook")

rmarkdown::render("vignettes/RunningCatalogueExport.Rmd",
                  output_file = "../inst/doc/runningCatalogueExport.pdf",
                  rmarkdown::pdf_document(latex_engine = "pdflatex",
                                          toc = TRUE, toc_depth = 3,
                                          number_sections = TRUE))
tools::compactPDF("inst/doc/runningCatalogueExport.pdf", gs_quality = "ebook")