PRA: Pattern Recognition Analysis (PRA)

In ELELAB/MoonlightR: Identify oncogenes and tumor suppressor genes from omics data

Pattern Recognition Analysis (PRA)

Description

This function carries out the pattern recognition analysis

Usage

PRA(dataURA, BPname, thres.role = 0)

Arguments

dataURA	output URA function
BPname	BPname
thres.role	thres.role

Value

returns list of TSGs and OCGs when biological processes are provided, otherwise a randomForest based classifier that can be used on new data

Examples

data(dataURA)
dataDual <- PRA(dataURA = dataURA,
BPname = c("apoptosis","proliferation of cells"),
thres.role = 0)

ELELAB/MoonlightR documentation built on Aug. 5, 2023, 1:43 p.m.