format_and_check_data: Format the data for output and perform some checks

In ERICNorthEast/ERIC_Data_Proc: Functions for data processing and validation

Format the data for output and perform some checks

Description

Format the data for output and perform some checks

Usage

format_and_check_data(raw_data, OutputCols, newColNames, sensitivecheck)

Arguments

raw_data	Set of species data
OutputCols	List of the columns to be output
newColNames	Labels for output columns
sensitivecheck	Highlight sensitive species or not

Examples

a <- c('','BirdsDir-A2.2')
b <- c('','')
c <- c('','')
d <- c('insect - butterfly','bird')
e <- c('Pieris rapae','Turdus merula')
f <- c('Small White','Blackbird')
g <- c('Mike Jeffries','Alnwick Wildlife Group')
h <- c('Morpeth Town','Morpeth Town')
i <- c('04/09/2010','04/09/2010')
j <- c('NZ18X','NZ18X')
k <- c('Butterfly Conservation','Alnwick Wildlife Group')
l <- c('Butterfly Conservation','Alnwick Wildlife Group')
m <- c('2 Count','1 Count')
n <- c('Considered Correct','Considered Correct')
o <- c(419000,419000)
p <- c(585000,585000)
q <- c(1000,1000)
r <- c('layer','layer')
s <- c('path','path')
df <- data.frame(a,b,c,d,e,f,a,g,h,h,i,j,k,l,m,n,o,p,q,r,s,b)
names(df) <- c('All.Design', 'Wildlife..', 'Wildlife_1', 'Taxon.grou', 'Taxon.Lati', 'Taxon.Comm', 'Obs.Commen', 'Sample.Rec', 'Sample.Loc', 'Sample.L_1', 'Sample.Dat', 'Sample.Spa', 'Survey.Run', 'Survey.Nam', 'Obs.Abunda', 'Determinat', 'Central_Ea', 'Central_No', 'Buffer', 'layer', 'path','Info')
OutputCols <- c("All.Design","Taxon.grou", "Taxon.Lati","Taxon.Comm", "Obs.Abunda", "Determinat","Obs.Commen","Sample.Rec",  "Sample.Loc",  "Sample.Dat","Sample.Spa","Survey.Run","Survey.Nam","Info")
newColNames <- c("Designations","Taxon group","Latin Name","Common Name","Abundances","Determination Type","Comments","Recorder","Location Name","Date","Grid Reference","Survey Run By","Survey Name","Additional Information")
data <- format_and_check_data(df,OutputCols,newColNames, 0)

ERICNorthEast/ERIC_Data_Proc documentation built on Dec. 5, 2023, 12:19 p.m.