getKdModels: getKdModels

In ETHZ-INS/scanMiRData: miRNA Affinity models for the scanMiR package

getKdModels

Description

Returns a collection of miRNA KdModels for the requested species. Note that by default, low-confidence miRNAs are not returned (see 'categories').

Usage

getKdModels(species = c("hsa", "mmu", "rno"), categories = NULL)

Arguments

species	Either "hsa" (human), "mmu" (mouse) or "rno" (rat)
categories	The categories of miRNAs to return. Any combination of "Low-confidence", "Poorly conserved", "Conserved across mammals", "Conserved across vertebrates". If NULL (default), all categories are returned. miRNAs with NA as conservation are not returned unless 'categories==NULL'.

Value

An object of class KdModelList

Examples

mods <- getKdModels("rno")
summary(mods)

ETHZ-INS/scanMiRData documentation built on July 20, 2023, 8:04 a.m.