Man pages for EarthSystemDiagnostics/baconr
Hierarchical Accumulation Modelling with Stan and R
| add_datapoints | Add Age Control Points to Plot |
| add_subdivisions | Add subdivision tickmarks |
| calibrate_14C_age | Calibrate Radiocarbon Dates with rcarbon::calibrate |
| compare_14C_PDF | Compare Empirical and t-distribution Approximated Calendar... |
| filter_hamstr_acc_rates | Smooth accumulation rates |
| gamma_sigma_shape | Convert between parametrisations of the gamma distribution |
| GetBrksHalfOffset | Get Overlapping Breaks Structure |
| GetIndices | Get Indices Structure For Hamstr Model from a Set of Breaks |
| get_inits_hamstr | Create Random Initial Values for the hamstr Stan Model |
| get_K_factor | Get Default K_factor |
| get_obs_age_err | Title |
| get_par_idx | Extract Stan Parameter Index |
| get_posterior_acc_rates | Get Posterior Accumulation Rates |
| get_posterior_ages | Get Posterior Age Models |
| get_smooth_i | Get Indices For Smoothing Accumulation Rates When Estimating... |
| get_stan_sampler_args | Default Parameters for Sampling Hamstr Models with Stan |
| GetWts | Get Weights for Parent Sections |
| hamstr | Fit a hamstr Age-Depth Model |
| hamstr_control | Return a List of hamstr Control Arguments |
| hamstr-package | The 'hamstr' package. |
| hierarchical_depths | Calculated depth of section boundary at all hierarchical... |
| interpolate_age_models | Interpolate Posterior Age Model At New Depths |
| make_stan_dat_hamstr | Make the data object required by the Stan sampler |
| MSB2K | MSB2K |
| plot_acc_mean_prior_posterior | Plot Mean Accumulation Rate Prior and Posterior Distributions |
| plot_age_models | Plot Age Models as Spaghetti Plot |
| plot_downcore_summary | Plot Downcore Summary |
| plot_gamma_prior_posterior | Plot A Gamma Prior and Posterior |
| plot_hamstr | Plot an hamstr_fit object |
| plot_hamstr_acc_rates | Plot accumulation rates |
| plot.hamstr_fit | Plot hamstr Objects |
| plot_hierarchical_acc_rate | Plot the hierarchical accumulation rate parameters |
| plot_infl_prior_posterior | Plot the Prior and Posterior Distributions of the Inflation... |
| plot_memory_prior_posterior | Plot Memory Prior and Posterior |
| plot_prior_posterior_hist | Plot a Prior and Posterior |
| plot_summary_age_models | Plot Summary of Posterior Age Models |
| predict.hamstr_fit | Interpolate Age Models at Arbitrary Depths |
| summarise_age_models | Summarise Posterior Age Models |
| SummariseEmpiricalPDF | Summarise an Empirical Probability Distribution Function. |
| summarise_hamstr_acc_rates | Summarise accumulation rates |
| summarise_hamstr_parameters | Summarise Hamstr Parameters |
| summarise_new_ages | Summarise Interpolated Posterior Age Models |
| summarise_q | Summarise to Quantiles and Moments |
| summary.hamstr_fit | Summarise hamstr Models |
| summary.hamstr_interpolated_ages | Summarise Age Models That Have Been Interpolated |
