get_core: Get core microbiota based on ASV Poisson modelling
In Ebedthan/coremicrobiota: Core Microbiota Analysis
get_core R Documentation
Get core microbiota based on ASV Poisson modelling
Description
Get core microbiota based on ASV Poisson modelling
Usage
get_core(x, taxa_are_rows = F)
Arguments
x
A data frame representing a ASV/OTU table with raw counts or
phyloseq object.
taxa_are_rows
A logical indicating if OTU are rows
Value
A data frame of species abundance distribution of core microbiome.
Examples
df <- data.frame(x=seq(0,10), y=seq(11,21))
get_core(df)
Ebedthan/coremicrobiota documentation built on May 2, 2023, 3:25 p.m.
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| get_core | R Documentation |
Get core microbiota based on ASV Poisson modelling
Description
Get core microbiota based on ASV Poisson modelling
Usage
get_core(x, taxa_are_rows = F)
Arguments
x |
A data frame representing a ASV/OTU table with raw counts or phyloseq object. |
taxa_are_rows |
A logical indicating if OTU are rows |
Value
A data frame of species abundance distribution of core microbiome.
Examples
df <- data.frame(x=seq(0,10), y=seq(11,21))
get_core(df)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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