Echisholm21/vprr
Processing and Visualization of Video Plankton Recorder Data

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Echisholm21/vprr: Processing and Visualization of Video Plankton Recorder Data
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Processing and Visualization of Video Plankton Recorder Data

.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/pkgdown.yaml
.github/workflows/r.yml
.gitignore
.travis.yml
CODE_OF_CONDUCT.md CONTRIBUTING.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/EC_functions.R R/clf_check_test.R R/create_sample_data.R R/data.R README.Rmd README.md SECURITY.md
_pkgdown.yml
cran-comments.md
data/category_conc_n.rda
data/ctd_dat_combine.rda
data/ctd_roi_merge.rda
data/ctd_roi_oce.rda
data/roi_dat_combine.rda
data/roimeas_dat_combine.rda
data/size_df_f.rda
doc/VPR_processing.R doc/VPR_processing.Rmd
doc/VPR_processing.html
docs/404.html
docs/_config.yml
docs/articles/VPR_processing.html
docs/articles/VPR_processing_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/index.html
docs/articles/r_flowchart.png
docs/articles/vp_flowchart.PNG
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
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docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/bin_calculate.html
docs/reference/bin_cast.html
docs/reference/concentration_category.html
docs/reference/ctd_cast.html
docs/reference/ctd_dat_combine.html
docs/reference/ctd_df_cols.html
docs/reference/ctd_roi_merge.html
docs/reference/ctd_roi_oce.html
docs/reference/getRoiMeasurements.html
docs/reference/index.html
docs/reference/insertRow.html
docs/reference/isopycnal_calculate.html
docs/reference/normalize_matrix.html
docs/reference/px_to_mm.html
docs/reference/roi_dat_combine.html
docs/reference/roimeas_dat_combine.html
docs/reference/size_df_f.html
docs/reference/taxa_conc_n.html
docs/reference/vp_plot_matrix.html
docs/reference/vp_plot_unkn.html
docs/reference/vpr_autoid_check.html
docs/reference/vpr_autoid_copy.html
docs/reference/vpr_autoid_create.html
docs/reference/vpr_autoid_read.html
docs/reference/vpr_category.html
docs/reference/vpr_category_create.html
docs/reference/vpr_ctd_files.html
docs/reference/vpr_ctd_read.html
docs/reference/vpr_ctd_ymd.html
docs/reference/vpr_ctdroi_merge.html
docs/reference/vpr_ctdroisize_merge.html
docs/reference/vpr_day.html
docs/reference/vpr_dayhour.html
docs/reference/vpr_hour.html
docs/reference/vpr_img_category.html
docs/reference/vpr_img_check.html
docs/reference/vpr_img_copy.html
docs/reference/vpr_img_depth.html
docs/reference/vpr_img_reclassified.html
docs/reference/vpr_manual_classification.html
docs/reference/vpr_oce_create.html
docs/reference/vpr_plot_TS.html
docs/reference/vpr_plot_TScat.html
docs/reference/vpr_plot_contour.html
docs/reference/vpr_plot_histsize.html
docs/reference/vpr_plot_profile.html
docs/reference/vpr_plot_sizefreq.html
docs/reference/vpr_roi.html
docs/reference/vpr_roi_concentration.html
docs/reference/vpr_save.html
docs/reference/vpr_size_bin.html
docs/reference/vpr_summary.html
docs/reference/vpr_trrois_size.html
docs/sitemap.xml
inst/WORDLIST
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inst/extdata/COR2019002/autoid/Calanus/aidmea/sep20_2svmaid.mea.d222.h04
inst/extdata/COR2019002/autoid/Other/aid/sep20_2svmaid.d222.h03
inst/extdata/COR2019002/autoid/Other/aid/sep20_2svmaid.d222.h04
inst/extdata/COR2019002/autoid/Other/aidmea/sep20_2svmaid.mea.d222.h03
inst/extdata/COR2019002/autoid/Other/aidmea/sep20_2svmaid.mea.d222.h04
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inst/extdata/COR2019002/autoid/bad_image_blurry/aid/sep20_2svmaid.d222.h04
inst/extdata/COR2019002/autoid/bad_image_blurry/aidmea/sep20_2svmaid.mea.d222.h03
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inst/extdata/COR2019002/autoid/bad_image_malfunction/aid/sep20_2svmaid.d222.h04
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inst/extdata/COR2019002/autoid/bad_image_strobe/aidmea/sep20_2svmaid.mea.d222.h04
inst/extdata/COR2019002/autoid/chaetognaths/aid/sep20_2svmaid.d222.h03
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inst/extdata/COR2019002/autoid/chaetognaths/aidmea/sep20_2svmaid.mea.d222.h04
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inst/extdata/COR2019002/autoid/ctenophores/aidmea/sep20_2svmaid.mea.d222.h03
inst/extdata/COR2019002/autoid/ctenophores/aidmea/sep20_2svmaid.mea.d222.h04
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inst/extdata/COR2019002/autoid/krill/aidmea/sep20_2svmaid.mea.d222.h03
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inst/extdata/COR2019002/autoid/marine_snow/aid/sep20_2svmaid.d222.h04
inst/extdata/COR2019002/autoid/marine_snow/aidmea/sep20_2svmaid.mea.d222.h03
inst/extdata/COR2019002/autoid/marine_snow/aidmea/sep20_2svmaid.mea.d222.h04
inst/extdata/COR2019002/autoid/small_copepod/aid/sep20_2svmaid.d222.h03
inst/extdata/COR2019002/autoid/small_copepod/aid/sep20_2svmaid.d222.h04
inst/extdata/COR2019002/autoid/small_copepod/aidmea/sep20_2svmaid.mea.d222.h03
inst/extdata/COR2019002/autoid/small_copepod/aidmea/sep20_2svmaid.mea.d222.h04
inst/extdata/COR2019002/autoid/stick/aid/sep20_2svmaid.d222.h03
inst/extdata/COR2019002/autoid/stick/aid/sep20_2svmaid.d222.h04
inst/extdata/COR2019002/autoid/stick/aidmea/sep20_2svmaid.mea.d222.h03
inst/extdata/COR2019002/autoid/stick/aidmea/sep20_2svmaid.mea.d222.h04
inst/extdata/COR2019002/rois/vpr5/d222/h03.zip
inst/extdata/COR2019002/rois/vpr5/d222/h03ctd.dat.gz
inst/extdata/COR2019002/rois/vpr5/d222/h04.zip
inst/extdata/COR2019002/rois/vpr5/d222/h04ctd.dat.gz
inst/extdata/COR2019002/vpr_metadata_COR2019002.csv
inst/extdata/vpr123_station25-metadata.json
inst/extdata/vpr123_station25.csv
inst/extdata/vpr_metadata_template.xlsx
man/bin_calculate.Rd man/bin_cast.Rd man/category_conc_n.Rd man/concentration_category.Rd man/ctd_cast.Rd man/ctd_dat_combine.Rd man/ctd_df_cols.Rd man/ctd_roi_merge.Rd man/ctd_roi_oce.Rd
man/figures/vprr_hex.png
man/insertRow.Rd man/isopycnal_calculate.Rd man/normalize_matrix.Rd man/package-imports.Rd man/px_to_mm.Rd man/read_aid_cnn.Rd man/roi_dat_combine.Rd man/roimeas_dat_combine.Rd man/size_df_f.Rd man/vpr_autoid_check.Rd man/vpr_autoid_copy.Rd man/vpr_autoid_create.Rd man/vpr_autoid_read.Rd man/vpr_category.Rd man/vpr_category_create.Rd man/vpr_ctd_files.Rd man/vpr_ctd_read.Rd man/vpr_ctd_ymd.Rd man/vpr_ctdroi_merge.Rd man/vpr_ctdroisize_merge.Rd man/vpr_day.Rd man/vpr_dayhour.Rd man/vpr_export.Rd man/vpr_hour.Rd man/vpr_img_category.Rd man/vpr_img_check.Rd man/vpr_img_copy.Rd man/vpr_img_depth.Rd man/vpr_img_reclassified.Rd man/vpr_manual_classification.Rd man/vpr_oce_create.Rd man/vpr_plot_TS.Rd man/vpr_plot_TScat.Rd man/vpr_plot_contour.Rd man/vpr_plot_profile.Rd man/vpr_pred_read.Rd man/vpr_roi.Rd man/vpr_roi_concentration.Rd man/vpr_save.Rd man/vpr_size_bin.Rd man/vpr_trrois_size.Rd tests/testthat.R tests/testthat/test_bin_calculate.R tests/testthat/test_concentration_calculate.r tests/testthat/test_data_merging.R tests/testthat/test_read_files.R
tests/testthat/testthat-problems.rds
vignettes/.gitignore
vignettes/VPR_processing.Rmd
vignettes/clf_check_3.png
vignettes/conPlot_cal_dens.png
vignettes/sharing_vpr_data.Rmd
vignettes/station_names_COR2019002.csv
vignettes/vprr_figure1.PNG
vignettes/vprr_figure2.PNG
vprr.Rproj
Echisholm21/vprr documentation built on Feb. 9, 2025, 4:21 p.m.

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