vpr_autoid_create: Modifies aid and aid mea files based on manual...

In Echisholm21/vprr: Processing and Visualization of Video Plankton Recorder Data

Modifies aid and aid mea files based on manual reclassification

Description

Modifies aid and aid mea files based on manual reclassification

Usage

vpr_autoid_create(
  reclassify,
  misclassified,
  basepath,
  day,
  hour,
  mea = TRUE,
  categories
)

Arguments

reclassify	list of reclassify files (output from vpr_manual_classification())
misclassified	list misclassify files (output from vpr_manual_classification())
basepath	path to folder containing autoid files (e.g., 'extdata/COR2019002/autoid')
day	day identifier for relevant aid & aidmeas files
hour	hour identifier for relevant aid & aidmeas files
mea	logical indicating whether or not there are accompanying measurement files to be created
categories	A list object with all the potential classification categories

Author(s)

E. Chisholm

Examples

## Not run: 
basepath <- 'E:/autoID_EC_07032019/'
day <- '289'
hr <- '08'
categories <-
c("bad_image_blurry", "bad_image_malfunction", "bad_image_strobe", "Calanus", "chaetognaths",
"ctenophores", "krill", "marine_snow", "Other", "small_copepod", "stick")
day_hour_files <-  paste0('d', day, '.h', hr)
misclassified <- list.files(day_hour_files, pattern = 'misclassified_', full.names = TRUE)
reclassify <- list.files(day_hour_files, pattern = 'reclassify_', full.names = TRUE)
vpr_autoid_create(reclassify, misclassified, basepath, categories)

## End(Not run)

Echisholm21/vprr documentation built on Feb. 9, 2025, 4:21 p.m.