seuratClustering: Seurat (SNN Graph Based) Clustering Function

In EdwardAgboraw/FrankenSeq: A user friendly and modular machine learning platform for scRNA-seq analysis

Seurat (SNN Graph Based) Clustering Function

Description

Seurat (SNN Graph Based) Clustering Function

Usage

seuratClustering(sO, noDim, res, reductionMethod, method)

Arguments

sO	the underlying Seurat object
noDim	the number of dimensions to be use in the clustering step
res	the Seurat resolution parameter
reductionMethod	the type of graph (UMAP or T-SNE) used to represent the results
method	the technique used to compress the data (PCA or GLM-PCA)

EdwardAgboraw/FrankenSeq documentation built on May 3, 2024, 8:26 a.m.