Man pages for Eiriksen/Genotools
Genotools

adv_calc_TGCCalculates Thermal Growth Coefficient TGC
assign_closest_matchesFinds the closest genetic matches to a set of individuals,...
calc_genetic_similarityCalculate the genetic similarity between two individuals...
calculate_similarities_to_samplecalculate_similarities_to_sample
changeNAChanges NA values in a dataframe to a given value
check_columnsCecks if certain columns exist in a dataset and returns an...
clean_IDConverts messy names and ID's to tidy clean ones.
clean_ID_dfIn a dataframe, converts messy names and ID's to tidy clean...
convertTypeConverts a variabe from one type to another
count_matchessubfunction of calc_genetic_similarity
create_similarityMatrixCreates a genetic similarity matrix
datesBetweenFunction for gaining a list of all dates between two dates...
determineSexConverting sdy to F or M
determineSex2determinesex2
findFamilyfindFamily DEPRECATED
find_familyIDfind_familyID subfunction
find_familyIDsObtains family IDs based on known mothers and fathers
find_familyInfoObtains info about a given family (mother x father) and adds...
funkyTransposefunkyTranspose...
GenotoolsGenotools: A collection of various tools for working with...
get_advanced_genotypesget_advanced_genotypes Deprecated! Use find_familyInfo...
get_familyInfoget_familyInfo DEPRECATEDW
lookupFor looking up variables from one dataset and then add them...
makeNAChanges certain values in a list/vector to NA
manipulateApplies a function on the column of a dataframe and then...
numextractConverts anything to a number
performperform
predict_weightspredict_weights
remoNARemoves rows with NA in a given column
renameGenotyperenameGenotype
renameGenotypesRename genotypes based on a lookup table
resolve_conflictsresolve_conflicts
safeMergesafeMerge
SDY_to_sexSDY_to_sex
selRandomSelects random rows from a dataframe
uniNAReplace NA values with unique new identifier
unSexBadSet sex to NA if many SNPs missing.
Eiriksen/Genotools documentation built on Oct. 1, 2022, 1:40 a.m.