adv_calc_TGC | Calculates Thermal Growth Coefficient TGC |
assign_closest_matches | Finds the closest genetic matches to a set of individuals,... |
calc_genetic_similarity | Calculate the genetic similarity between two individuals... |
calculate_similarities_to_sample | calculate_similarities_to_sample |
changeNA | Changes NA values in a dataframe to a given value |
check_columns | Cecks if certain columns exist in a dataset and returns an... |
clean_ID | Converts messy names and ID's to tidy clean ones. |
clean_ID_df | In a dataframe, converts messy names and ID's to tidy clean... |
convertType | Converts a variabe from one type to another |
count_matches | subfunction of calc_genetic_similarity |
create_similarityMatrix | Creates a genetic similarity matrix |
datesBetween | Function for gaining a list of all dates between two dates... |
determineSex | Converting sdy to F or M |
determineSex2 | determinesex2 |
findFamily | findFamily DEPRECATED |
find_familyID | find_familyID subfunction |
find_familyIDs | Obtains family IDs based on known mothers and fathers |
find_familyInfo | Obtains info about a given family (mother x father) and adds... |
funkyTranspose | funkyTranspose... |
Genotools | Genotools: A collection of various tools for working with... |
get_advanced_genotypes | get_advanced_genotypes Deprecated! Use find_familyInfo... |
get_familyInfo | get_familyInfo DEPRECATEDW |
lookup | For looking up variables from one dataset and then add them... |
makeNA | Changes certain values in a list/vector to NA |
manipulate | Applies a function on the column of a dataframe and then... |
numextract | Converts anything to a number |
perform | perform |
predict_weights | predict_weights |
remoNA | Removes rows with NA in a given column |
renameGenotype | renameGenotype |
renameGenotypes | Rename genotypes based on a lookup table |
resolve_conflicts | resolve_conflicts |
safeMerge | safeMerge |
SDY_to_sex | SDY_to_sex |
selRandom | Selects random rows from a dataframe |
uniNA | Replace NA values with unique new identifier |
unSexBad | Set sex to NA if many SNPs missing. |
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