Man pages for Eiriksen/fishytools
What the Package Does (One Line, Title Case)
| assign_closest_matches | Finds the closest genetic matches to a set of individuals,... |
| calc_genetic_similarity | Calculate the genetic similarity between two individuals... |
| calc_TGC_df | Calculates Thermal Growth Coefficient TGC |
| calculate_similarities_to_sample | calculate_similarities_to_sample |
| changeNA | Changes NA values in a dataframe to a given value |
| check_columns | Cecks if certain columns exist in a dataset and returns an... |
| checkup | Applies a function on the column of a dataframe and then... |
| clean_ID | Converts messy names and ID's to tidy clean ones. |
| clean_ID_df | In a dataframe, converts messy names and ID's to tidy clean... |
| convertType | Converts a variabe from one type to another |
| count_matches | subfunction of calc_genetic_similarity |
| create_similarityMatrix | Creates a genetic similarity matrix |
| datesBetween | Function for gaining a list of all dates between two dates... |
| determineSex | Converting sdy to F or M |
| determineSex2 | determinesex2 |
| findFamily | findFamily DEPRECATED |
| find_familyID | find_familyID subfunction |
| find_familyIDs | Obtains family IDs based on known mothers and fathers |
| find_familyInfo | Obtains info about a given family (mother x father) and adds... |
| format.snpptFile | SNPPITfile |
| funkyTranspose | funkyTranspose... |
| Genotools | Genotools: A collection of various tools for working with... |
| get_advanced_genotypes | get_advanced_genotypes Deprecated! Use find_familyInfo... |
| get_familyInfo | get_familyInfo DEPRECATEDW |
| intextract | Converts anything to a number |
| lookup | Look up individual-associated data from one dataset and... |
| lookup_olde | For looking up variables from one dataset and then add them... |
| makeNA | Changes certain values in a list/vector to NA |
| numextract | Converts anything to a number |
| perform | perform |
| predict_weights_df | predict_weights_df |
| ransamp | Random, condition based samplig of a set of individuals |
| remoNA | Removes rows with NA in a given column |
| renameGenotype | renameGenotype |
| renameGenotypes | Rename genotypes based on a lookup table |
| resolve_conflicts | resolve_conflicts |
| run_snppit | Parentage analysis (using SNPPT.exe) #' Function that... |
| safeMerge | safeMerge |
| SDY_to_sex | SDY_to_sex |
| selRandom | Selects random rows from a dataframe |
| SNPPITfile | SNPPITfile |
| uniNA | Replace NA values with unique new identifier |
| unSexBad | Set sex to NA if many SNPs missing. |
