calc_genetic_similarity: Calculate the genetic similarity between two individuals...
In Eiriksen/fishytools: What the Package Does (One Line, Title Case)
View source: R/script - gene-match-o-matic 2000.R
Description
takes two vectors of SNPs,
Each element in the vector should be the genotypes of one SNP, written as bases, e.g "CT" "CC" "AT" etc. Order, e.g. "CT" or "TC" is not taken into account.
It's important that the order of SNPs in the two vectors are the same.
Returns an integer between 1 and 0 (0 = 0
Usage
1
calc_genetic_similarity(sample1, sample2, cutoff_NA_collective = 50)
Arguments
SNPs1
the first vector of SNPs
SNPs2
the second vector of SNPs
Eiriksen/fishytools documentation built on April 4, 2020, 5:08 a.m.
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View source: R/script - gene-match-o-matic 2000.R
Description
takes two vectors of SNPs, Each element in the vector should be the genotypes of one SNP, written as bases, e.g "CT" "CC" "AT" etc. Order, e.g. "CT" or "TC" is not taken into account. It's important that the order of SNPs in the two vectors are the same. Returns an integer between 1 and 0 (0 = 0
Usage
1 | calc_genetic_similarity(sample1, sample2, cutoff_NA_collective = 50)
|
Arguments
SNPs1 |
the first vector of SNPs |
SNPs2 |
the second vector of SNPs |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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