R/data.R

In ElenaTuzhilina/PoisMS: Principal Curve based chromatin reconstruction

#' Small contact matrix
#' 
#' Example of a contact matrix.
#' 
#' @format A 20x20 symmetric nonnegative integer-valued matrix.
#'
"C"

#' Hi-C data for IMR90 cells 
#' 
#' Contact matrix calculated for chromosomes 20 and resolutions 25kb (obtained from the Gene Expression Omnibus). 
#' 
#' @format A 2498x2498 symmetric nonnegative integer-valued matrix.
#'
"IMR90_25kb_chr20"

#' Hi-C data for IMR90 cells 
#' 
#' Contact matrix calculated for chromosomes 21 and resolutions 25kb (obtained from the Gene Expression Omnibus). 
#' 
#' @format A 1878x1878 symmetric nonnegative integer-valued matrix.
#'
"IMR90_25kb_chr21"

#' Hi-C data for IMR90 cells 
#' 
#' Contact matrix calculated for chromosomes 20 and resolutions 50kb (obtained from the Gene Expression Omnibus). 
#' 
#' @format A 1249x1249 symmetric nonnegative integer-valued matrix.
#'
"IMR90_50kb_chr20"

#' Hi-C data for IMR90 cells 
#' 
#' Contact matrix calculated for chromosomes 21 and resolutions 50kb (obtained from the Gene Expression Omnibus). 
#' 
#' @format A 939x939 symmetric nonnegative integer-valued matrix.
#'
"IMR90_50kb_chr21"

#' Hi-C data for IMR90 cells 
#' 
#' Contact matrix calculated for chromosomes 20 and resolutions 100kb (obtained from the Gene Expression Omnibus). 
#' 
#' @format A 625x625 symmetric nonnegative integer-valued matrix.
#'
"IMR90_100kb_chr20"

#' Hi-C data for IMR90 cells 
#' 
#' Contact matrix calculated for chromosomes 21 and resolutions 100kb (obtained from the Gene Expression Omnibus). 
#' 
#' @format A 470x470 symmetric nonnegative integer-valued matrix.
#'
"IMR90_100kb_chr21"