run_edgeR: edgeR wrapper
In Emask7/ZIKVtranscriptomics: ZIKV Transcriptomics Analyses
Description
Usage
Arguments
Examples
Description
edgeR wrapper
Usage
1
run_edgeR(DEGlist, plotName, norm_method, design_table)
Arguments
DEGlist
a DGElist object
plotName
string to be used as part part of the names of figures. If "NA" no plots will be made.
norm_method
string indicating normalization method. Either "TMM", "TMMwsp", "RLE", "upperquartile", or "none"
design_table
a table indicating the factors of the experimental design
Examples
1
run_edgeR(DEGlist, plotName, norm_method, design_table)
Emask7/ZIKVtranscriptomics documentation built on Jan. 25, 2022, 12:32 a.m.
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Description Usage Arguments Examples
Description
edgeR wrapper
Usage
1 | run_edgeR(DEGlist, plotName, norm_method, design_table)
|
Arguments
DEGlist |
a DGElist object |
plotName |
string to be used as part part of the names of figures. If "NA" no plots will be made. |
norm_method |
string indicating normalization method. Either "TMM", "TMMwsp", "RLE", "upperquartile", or "none" |
design_table |
a table indicating the factors of the experimental design |
Examples
1 | run_edgeR(DEGlist, plotName, norm_method, design_table)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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