read.nifti.files: STEP 1 IN PNC ANALYSIS - READ IN NIFTI FILE Function...

In EmilyLMorris/ImagingPred: Code for performing prediction of functional connectivity using brain imaging data

Description

STEP 1 IN PNC ANALYSIS - READ IN NIFTI FILE Function summarizes imaging from nifti files into 264 regions with corresponding time series

Usage

read.nifti.files(
  file.names,
  path = NULL,
  method = "average",
  resolution = 2,
  template = NULL,
  PNC = FALSE
)

Arguments

file.names	provide names of files
path	optional path of files, needs to be included if path to files is not included in file.names
method	method for summarizing within region. Default is averaging all voxels in a given region, "pca" also available if using the first prinicipal component.
resolution	resolution of images. Template provided for 2mm and 3mm resolution, default is 2.
template	option to provide an alternative template if not using standard 2mm or 3mm ones provided.
PNC	option to specify is using PNC raw data, which needs to be converted to standard coordinates.

Value

List of files containing region level voxel summaries for each subject.

EmilyLMorris/ImagingPred documentation built on June 19, 2021, 9:33 p.m.